Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0776.Seq
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0730 + 31284936-31285085,31285228-31285452,31287058-312872... 31 0.79
01_01_0848 + 6614403-6614768 30 1.4
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 29 2.4
01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804... 29 2.4
12_02_0326 + 17555731-17556387 29 3.2
06_03_0667 - 23290585-23290962 28 5.6
08_02_0059 - 11778739-11780998,11781744-11781751 28 7.4
06_03_1399 + 29892993-29893154,29894819-29895132,29895227-298953... 28 7.4
02_05_0482 + 29382696-29383251,29383376-29383692 28 7.4
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 27 9.7
>02_05_0730 +
31284936-31285085,31285228-31285452,31287058-31287252,
31287357-31287418,31287768-31288032
Length = 298
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 647 CKTTAVWTILEPVMFFVGIYTPLN*HWHSIHVNVFNTF 534
C + + ++ PV +G TP+ HWHS+ V V TF
Sbjct: 139 CASFVLKAVIHPVDV-IGTTTPVGPHWHSLVVEVIVTF 175
>01_01_0848 + 6614403-6614768
Length = 121
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 551 LHECYASVSSKVCRFPRRTSLAPELSRQLLS 643
+ C+ASV++ + R PRR + P L QLL+
Sbjct: 1 MSSCWASVAAALRRAPRRRTREPSLQEQLLA 31
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 296 FSHAPHCSNTPVTPPAAHKTCRSLRQHHSS 207
F+ CS+ P TP AA+ T S R H S
Sbjct: 241 FTRRRSCSDAPPTPEAANTTAASSRSHRHS 270
>01_05_0491 -
22680011-22680125,22680210-22680307,22680392-22680472,
22680564-22680677,22680757-22680823,22680947-22681017,
22681099-22681236,22681324-22681530,22681630-22681773,
22681856-22682017,22682117-22682173,22682256-22682348,
22682425-22682542,22682678-22682817,22683031-22683590,
22683703-22683805
Length = 755
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 528 DNERVKDIYMNAMPVLVQRCVDSHEEHHWLQNCPD 632
+NE K +Y P++V R VD HE + L D
Sbjct: 315 ENENEKAVYCEVKPMIVDRGVDIHENNSQLPGLND 349
>12_02_0326 + 17555731-17556387
Length = 218
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 293 SHAPHCSNTPVTPPAAHKTCRSLRQHHSSP 204
SH PH P+TP + + L+ HH P
Sbjct: 52 SHLPHPRRIPITPASRSRKPLHLQPHHPKP 81
>06_03_0667 - 23290585-23290962
Length = 125
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 304 TACVLARRVPWPGLRLVQRAVEAALRNHV 390
T ++A R PGL AV ALRNH+
Sbjct: 93 TLSLVAPRAQLPGLAFANAAVAMALRNHI 121
>08_02_0059 - 11778739-11780998,11781744-11781751
Length = 755
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 299 VFSHAP-HCSNTPVTPPAAHKTCRSLRQHHSSPISRF 192
+F P + V+ P+ TC S QH S ISRF
Sbjct: 389 IFEEIPASTAEESVSSPSCFPTCCSCEQHRSPKISRF 425
>06_03_1399 +
29892993-29893154,29894819-29895132,29895227-29895319,
29895424-29895514,29895791-29895884,29896161-29896255,
29896432-29896501,29896612-29896691,29897145-29897261,
29897566-29897642,29897907-29898432
Length = 572
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 302 TVFSHAPHCSNTPVTPPAAHKTCRSLRQHHSSPISRFVCNLHVNGE*QLILE-HEFLDTA 126
T + + C P AH+T S R H SSP F N + + L+ + LD
Sbjct: 502 TGYGRSKSCEPPPNRGKKAHRTWDSCRSHGSSPAREFGRNSASELDKTMDLDVIDGLDRL 561
Query: 125 TNFH 114
T++H
Sbjct: 562 TSYH 565
>02_05_0482 + 29382696-29383251,29383376-29383692
Length = 290
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 409 SGVVRLPHDS*VQPLRPAALILVLAKGPVWRAH 311
SG+VRL + QP+ P L + P WRA+
Sbjct: 169 SGLVRLALECEKQPINPGEKRRALLEEPTWRAY 201
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 41 AFKIKNITQKLHTDNREKFVLPTPCGSLSRYRGIRAQGSAVT 166
+ + + +KL+ D K LP+P G LSR G A +
Sbjct: 247 SLSVDSFIEKLNFDESPKLPLPSPSGGLSRSGSGSLDGGAAS 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,563,677
Number of Sequences: 37544
Number of extensions: 363863
Number of successful extensions: 1011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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