Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0776.Seq
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12023| Best HMM Match : Fibrinogen_C (HMM E-Value=2.1e-08)          31   0.81 
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)                29   2.5  
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     29   3.3  
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         27   9.9  

>SB_12023| Best HMM Match : Fibrinogen_C (HMM E-Value=2.1e-08)
          Length = 201

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 332 GTRLASTQAVTVFSHAPHCSNTPVTPPAAHKTCRSLRQHHS-SPISRFVCNLHVNG 168
           GT L + Q V  F     CS        A K+C ++  H   SP+ RF+C L  NG
Sbjct: 30  GTVLKAVQVVDDFGCIAECSR-------AKKSCSAVNFHKRISPVGRFLCQLLANG 78


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 54   KISPKNYTPTTVKSSFYLLHVEVCR 128
            KISP + TPTT  SSF  LH +  R
Sbjct: 1090 KISPTSITPTTKPSSFCKLHCQTLR 1114


>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 341 PGQGTRLASTQAVTVFSHAPHCSNTPVTPPAAHKTCRSLRQHHSSP 204
           P   T    T  + + SH  H  + P  PPA+     SL +HH  P
Sbjct: 39  PPPATASPPTPCIVIISHPLHRHHPP--PPASSSFPHSLHRHHPPP 82


>SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)
          Length = 147

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 353 TNLSPGQGTRLASTQAVTVFSHAPHCSN-TPVTP--PAAHKTCRSLRQHHSSPISRFVCN 183
           TN++P   T   ST+      H P C+N T + P    A  + R  +QH   P+     N
Sbjct: 40  TNINPCVQTAPTSTRVCKQHQHQPVCANSTNINPCVQTAPTSTRVCKQHQHQPVCANSTN 99

Query: 182 LH 177
           ++
Sbjct: 100 IN 101



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 353 TNLSPGQGTRLASTQAVTVFSHAPHCSN-TPVTP--PAAHKTCRSLRQHHSSPI 201
           TN++P   T   ST+      H P C+N T + P    A  + R  +QH   P+
Sbjct: 69  TNINPCVQTAPTSTRVCKQHQHQPVCANSTNINPCVQTAPTSTRVCKQHQHQPV 122



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -1

Query: 353 TNLSPGQGTRLASTQAVTVFSHAPHCSN-TPVTP--PAAHKTCRSLRQHHSSPISRFVCN 183
           TN++P   T   ST+      H P C N T + P    A  + R  +QH   P+     N
Sbjct: 11  TNINPCVQTAPTSTRVCKQHQHQPVCVNSTNINPCVQTAPTSTRVCKQHQHQPVCANSTN 70

Query: 182 LH 177
           ++
Sbjct: 71  IN 72


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 163 HSPLTCRLQTNLEIGLLWCCRNERHVL*AAGGVTGVFEQWGACEKTVTACVL 318
           H    CR+   L+I  L  CR+E H+L     +T +FE +  C    T CV+
Sbjct: 641 HKIRNCRVA--LKITQLLICRSEMHLLAKKYSLTALFEAF-YCSTIPTLCVM 689


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 353 TNLSPGQGTRLASTQAVTVFSHAPHCSNTPVTP 255
           T+L P QGT++ S     V  ++P  ++TP  P
Sbjct: 402 TSLVPTQGTQVLSDAGSNVVQYSPTMASTPSPP 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,495,560
Number of Sequences: 59808
Number of extensions: 418049
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)