Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0776.Seq
         (647 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.7  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   4.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   8.3  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 212 YGVVAMNGTFYEQLGV*QGYS 274
           Y  +A++GTFY++ G+  G S
Sbjct: 649 YDALALDGTFYQKSGIISGGS 669


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 337  PGLR-LVQRAVEAALRNHVEDERLQRDANDEALLTSLLTTR 456
            PG+R   + A+ A LR     ERL    N + LLT +L ++
Sbjct: 964  PGVRESAEHAMFACLRFAEVRERLMDGVNPDTLLTHMLQSQ 1004


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 275 SNTPVTPPAAHKTCRSLRQHH 213
           S+  +TPP+ H    ++  HH
Sbjct: 855 SSAVITPPSTHHQAAAVAAHH 875


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,897
Number of Sequences: 2352
Number of extensions: 13762
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)