Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0776.Seq
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear recep...    29   3.8  
AF022976-15|AAO26008.1|  324|Caenorhabditis elegans Nuclear horm...    29   3.8  
AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear horm...    29   3.8  
Z70686-6|CAA94612.1|  352|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AY008130-1|AAG32083.1|  352|Caenorhabditis elegans heterotrimeri...    28   5.0  
Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kin...    27   8.7  

>AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-58 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 123 KLPHGVGKTN-FSRLSVCSFWVIFFILNAGRLENMDLFQRLD 1
           K+P  +   N FSR      W  +F+  A  L N D FQ+L+
Sbjct: 161 KMPVNMATNNVFSRGDCSDCWEYYFLTTATWLTNFDEFQKLE 202


>AF022976-15|AAO26008.1|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 123 KLPHGVGKTN-FSRLSVCSFWVIFFILNAGRLENMDLFQRLD 1
           K+P  +   N FSR      W  +F+  A  L N D FQ+L+
Sbjct: 90  KMPVNMATNNVFSRGDCSDCWEYYFLTTATWLTNFDEFQKLE 131


>AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform a protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 123 KLPHGVGKTN-FSRLSVCSFWVIFFILNAGRLENMDLFQRLD 1
           K+P  +   N FSR      W  +F+  A  L N D FQ+L+
Sbjct: 159 KMPVNMATNNVFSRGDCSDCWEYYFLTTATWLTNFDEFQKLE 200


>Z70686-6|CAA94612.1|  352|Caenorhabditis elegans Hypothetical
           protein R10H10.5 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 106 YSMWKFVAVSRNSCSRISCHSPLTCRLQTN 195
           Y  WKF  ++R+S   I CH   TC   TN
Sbjct: 301 YIQWKFEQLNRSSQREIYCHH--TCATDTN 328


>AY008130-1|AAG32083.1|  352|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 106 YSMWKFVAVSRNSCSRISCHSPLTCRLQTN 195
           Y  WKF  ++R+S   I CH   TC   TN
Sbjct: 301 YIQWKFEQLNRSSQREIYCHH--TCATDTN 328


>Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical
           protein T04C10.1 protein.
          Length = 882

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 489 TISTLNILPLLNTDNERVKDIYMNAMPVL 575
           T S  N +P+ ++DN   +D + NA P+L
Sbjct: 241 TFSIHNAIPITSSDNHYQQDAHQNAPPLL 269


>AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kinase
           protein.
          Length = 882

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 489 TISTLNILPLLNTDNERVKDIYMNAMPVL 575
           T S  N +P+ ++DN   +D + NA P+L
Sbjct: 241 TFSIHNAIPITSSDNHYQQDAHQNAPPLL 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,825,799
Number of Sequences: 27780
Number of extensions: 309148
Number of successful extensions: 844
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)