Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0776.Seq
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 136 RNSCSRISCHSPLTCRLQTNLEIGLLWCCRNER 234
           +N  +R    + L C  Q    IG+LW   N+R
Sbjct: 784 KNQTARRGEPAVLQCEAQGEKPIGILWNMNNKR 816


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 334 WPGLRLVQRAVEAALRN 384
           WP    +QR V AA+R+
Sbjct: 590 WPSTSQIQRGVNAAIRS 606


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 118 KFVAVSRNSCSRISCHSPLTC-RLQTNLEIGLLWCCRNERH 237
           K+  +S       SC S L C  ++ +L+   L  CR+ RH
Sbjct: 312 KYEGISSTPSQASSC-SCLDCDEIRESLDTQFLQVCRSRRH 351


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 14  NKSMFSNLPAFKIKNITQK 70
           N  M SN+  +K KN+ QK
Sbjct: 62  NYDMESNMDMYKDKNVVQK 80


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 14  NKSMFSNLPAFKIKNITQK 70
           N  M SN+  +K KN+ QK
Sbjct: 62  NYDMESNMDMYKDKNVVQK 80


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 206 GCYGVVAMNGTFYE 247
           GC G VA NG  Y+
Sbjct: 418 GCSGFVAFNGDQYD 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,289
Number of Sequences: 438
Number of extensions: 3702
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)