Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0776.Seq
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    29   3.5  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    29   3.5  
At2g28355.1 68415.m03446 expressed protein contains similarity t...    28   4.7  
At2g02650.1 68415.m00204 reverse transcriptase-related similar t...    28   4.7  
At5g44110.1 68418.m05397 ABC transporter family protein                28   6.1  

>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -1

Query: 344 SPGQGTRLASTQAVTVFSHAPHCSNTPVTPPAAHKTCRSLRQHHSSP 204
           SP   T   ST + T   H P  + TP TPP     C S   H S+P
Sbjct: 74  SPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPC---NCGSPPSHPSTP 117


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -1

Query: 344 SPGQGTRLASTQAVTVFSHAPHCSNTPVTPPAAHKTCRSLRQHHSSP 204
           SP   T   ST + T   H P  + TP TPP     C S   H S+P
Sbjct: 74  SPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPC---NCGSPPSHPSTP 117


>At2g28355.1 68415.m03446 expressed protein contains similarity to
           anther-specific protein GI:1448935 from [Brassica rapa]
          Length = 78

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 258 CNRGIRAVGCMRKDCDSLCARQTG 329
           CN  ++   C+  +CDS+C ++ G
Sbjct: 36  CNEILKQSNCVAAECDSMCVKKRG 59


>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278
          Length = 365

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 531 NERVKDIYMNAMPVLVQRCVDSHEEHHWLQNCP 629
           N R++   ++A P+  + C++    HH + NCP
Sbjct: 61  NTRLRSRNIDADPICQRCCIEEETIHHIMFNCP 93


>At5g44110.1 68418.m05397 ABC transporter family protein
          Length = 282

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 376 VQPLRPAALILVLAKGPVWRAHRLSQSFRMHPTARIPLLHP-QLLIKRAVHCDNTIAAQ 203
           + P R   LI +L     WR H++S   R      + LLHP ++L+   V  D  + A+
Sbjct: 125 IDPFRREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVAR 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,368
Number of Sequences: 28952
Number of extensions: 283764
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)