Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0775.Seq
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0A9H6 Cluster: Cytochrome c precursor; n=1; Alkalilimn...    34   3.4  
UniRef50_Q245I3 Cluster: UvrD/REP helicase family protein; n=2; ...    34   3.4  
UniRef50_A0BXX4 Cluster: Chromosome undetermined scaffold_135, w...    33   7.9  

>UniRef50_Q0A9H6 Cluster: Cytochrome c precursor; n=1;
           Alkalilimnicola ehrlichei MLHE-1|Rep: Cytochrome c
           precursor - Alkalilimnicola ehrlichei (strain MLHE-1)
          Length = 295

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 252 KWFNVLPG-YQDSYSREGTCHRMIHILNFFRHCASCH 145
           KW N  PG ++   SR  T +R  ++++   HCA CH
Sbjct: 160 KWLNFEPGEFEPDPSRSETWNRGAYLVHALSHCAECH 196


>UniRef50_Q245I3 Cluster: UvrD/REP helicase family protein; n=2;
           Tetrahymena thermophila SB210|Rep: UvrD/REP helicase
           family protein - Tetrahymena thermophila SB210
          Length = 1203

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 365 ENKVIHVYNSKHAFYKKSKAVAWCFKFL*EMNSIRHSESGLMSYQDTRIVIVE 207
           +N+ IH+YN    F  +SK + +C + L  +      +S   SYQ+    IV+
Sbjct: 205 QNQKIHIYNLSINFRSQSKIIEFCNQILINIKKSHQMQSAKQSYQEEEKPIVK 257


>UniRef50_A0BXX4 Cluster: Chromosome undetermined scaffold_135, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_135, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1074

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 123  FYEYPNSYDTKHNDEKNSVYVSSGGTFLLDYNYPGILV 236
            + +Y N+  T +N  +N+  +    +FL+ YN+PG+L+
Sbjct: 907  YTDYNNTNQTNNNQNQNNNQIIDEQSFLVIYNFPGLLL 944


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,985,759
Number of Sequences: 1657284
Number of extensions: 9944972
Number of successful extensions: 21422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21409
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)