Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0775.Seq
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   2.4  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   3.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   4.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.5  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   9.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   9.5  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 132 YPNSYDTKHNDEKNSVYVSSGGTFLLDYNY 221
           YP  Y+ +  D+ N  Y  SGG   LD  Y
Sbjct: 364 YPKEYEARKLDKLNYRYPGSGGESYLDVIY 393


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 462 KTTLSQTYKFIEH*NNHLCDSFNFAI 539
           K T+ ++ K +EH N H+C  +++ +
Sbjct: 332 KLTIEESSKSVEHANQHVCFHYDYTL 357


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 144 YDTKHNDEKNSVYVSSGGTFLLDYNYP-GILVRH 242
           Y  K+ D+  ++YVS+   ++L +N+  G ++ H
Sbjct: 574 YSQKYGDDGGTLYVSTNNGYVLMFNFQNGQVIEH 607


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 356 VIHVYNSKHAFYKKSKAV 303
           ++  Y+SKHA Y+ SKAV
Sbjct: 292 LVENYHSKHAKYESSKAV 309


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 477 QTYKFIEH*NNHLCDSFNFAIPNSVNKLIVSVTITSLVLI 596
           Q Y+   H    L +S NF+ P+  N    SVTI +L+ +
Sbjct: 757 QNYRLAAHLLESLLES-NFSTPDGANDSNNSVTIRNLIAL 795


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 135 PNSYDTKHNDEKNSVYVS 188
           PNS++T  N++ N  YVS
Sbjct: 365 PNSHNTSDNEQNNEDYVS 382


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 641 FQFRFWRTVSLHPV 600
           +QF FWR+V L P+
Sbjct: 389 YQFNFWRSVQLKPM 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,077
Number of Sequences: 5004
Number of extensions: 48067
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)