Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0775.Seq
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0156 + 1188143-1189957                                           30   1.4  
11_01_0158 + 1307648-1309462                                           29   2.4  
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350...    29   2.4  

>12_01_0156 + 1188143-1189957
          Length = 604

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +1

Query: 136 LIVMTRSTMTKKIQYMYHPVARSFSTITILVSW*DIKPLSECLIEFISHRNLK 294
           L V+T       I++  +PVA + +  ++L S+   +PL   LI + +HR+L+
Sbjct: 44  LKVLTHVLSADSIRFSIYPVASAAAAASLLASFSASQPLCLLLINWGAHRDLR 96


>11_01_0158 + 1307648-1309462
          Length = 604

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 136 LIVMTRSTMTKKIQYMYHPVARSFSTITILVSW*DIKPLSECLIEFISHRNLK 294
           L V+T       I++  +PVA + +  ++L S+    PL   LI + +HR+L+
Sbjct: 44  LKVLTHVLSADSIRFSIYPVASAAAAASLLASFSASHPLCLLLINWGAHRDLR 96


>07_01_0464 -
           3504264-3504475,3504842-3505031,3505310-3505408,
           3505561-3505653,3505926-3506891,3507267-3507485,
           3508038-3508247,3508371-3508630,3508956-3510737,
           3510796-3511009
          Length = 1414

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 386 LQICKMQENKVIHVYNSKHAFYKKSKAVAWCFKFL 282
           L+ C + +  ++    ++HA Y+ S AVA+ F FL
Sbjct: 544 LEACTVLKKTIVPGEGTRHAAYRSSLAVAFLFSFL 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,167
Number of Sequences: 37544
Number of extensions: 243381
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)