Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0775.Seq
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 123 FYEYPNSYDTKHNDEKNSVYVSSGGTFLLDYN 218
           + EY N Y+T++N+E N+ Y +   T   +YN
Sbjct: 261 YNEYNNDYNTEYNNEYNTEYNTEYNTEYTEYN 292



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 129 EYPNSYDTKHNDEKNSVYVSSGGTFLLDYN 218
           EY   Y+T++N E N+ Y++   T   +YN
Sbjct: 527 EYNTEYNTEYNTEYNTEYITEYNTDYTEYN 556



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 129 EYPNSYDTKHNDEKNSVYVSSGGTFLLDYN 218
           EY N Y+T++N E N+ Y      +  +YN
Sbjct: 271 EYNNEYNTEYNTEYNTEYTEYNTEYNTEYN 300


>SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 279 RDELNKTLR-KWFNVLPGYQDSYSR 208
           RD+ +K +  KW N++PG+QD + +
Sbjct: 136 RDDRDKYVEIKWENIIPGFQDQFDK 160


>SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 129 EYPNSYDTKHNDEKNSVYVSSGGTFLLDYN 218
           EY N Y+T++N E N+ Y      +  +YN
Sbjct: 44  EYNNEYNTEYNTEYNTDYTEYNTEYNTEYN 73


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 498 H*NNHLCDSFNFAIP-NSVNKLIVSVTITSLVLIPYR 605
           H + HL D F F I   ++   I+SV IT  +LIPYR
Sbjct: 277 HHHYHLDDHFIFIIIITTLIVSIISVAITVHILIPYR 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,768
Number of Sequences: 59808
Number of extensions: 325254
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)