Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0775.Seq
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11890.1 68418.m01391 expressed protein                             31   0.67 
At4g04850.1 68417.m00707 K+ efflux antiporter, putative (KEA3) s...    29   2.0  

>At5g11890.1 68418.m01391 expressed protein
          Length = 287

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 97  RYFCSLCECFTNILIVMTRSTMTK----KIQYMYHPVARSFSTITILVSW*DIKPLSECL 264
           R  C  C CF +ILI++  + MT      +  +YHP   SFS  +I +S  ++   S+  
Sbjct: 76  RRICCCC-CFWSILIILILALMTAIAATAMYVIYHPRPPSFSVPSIRISRVNLTTSSDSS 134

Query: 265 IEFIS 279
           +  +S
Sbjct: 135 VSHLS 139


>At4g04850.1 68417.m00707 K+ efflux antiporter, putative (KEA3)
           similar to A. thaliana K+ antiporter KEA1, GenBank
           accession number AF003382; Monovalent cation:proton
           antiporter family 2 (CPA2 family) member, PMID:11500563
          Length = 488

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 537 IPNSVNKLIVSVTITSLVLIPY 602
           +PN +NKL++ V + S+ L PY
Sbjct: 323 LPNELNKLLIIVVVLSMALTPY 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,480,972
Number of Sequences: 28952
Number of extensions: 225294
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)