Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0774.Seq
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510...    29   3.7  
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313...    28   8.5  
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    28   8.5  

>07_01_0678 -
           5103836-5104613,5104697-5104888,5104994-5105036,
           5105712-5105835,5105924-5106016,5106754-5106931,
           5107032-5107138,5108098-5108179,5108277-5108314,
           5108409-5108495,5109025-5109135,5109282-5109773
          Length = 774

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = -3

Query: 512 KVVVLNLFGLRKVQNRPERMLKQYK-----ISKFIVPNGFTSERSNR 387
           K+ +  L  + K+  + ER+LK+ +     I  F+ P+GFT+ RS R
Sbjct: 382 KLKIEYLPDIEKIHKKKERLLKKQQREALLIDSFLAPDGFTTGRSLR 428


>08_02_0819 -
           21529913-21530064,21531016-21531082,21531284-21531373,
           21531506-21531622,21532026-21532145,21532313-21533581
          Length = 604

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 555 RSSCPSTKHKTVAPFVKKYIVYFSKSFQTQQKFPSLFSI 671
           RS C ST    VAP V  YIV   K  ++  +F ++  +
Sbjct: 356 RSRCCSTSQSGVAPLVFNYIVDARKGKKSASQFENIHQL 394


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 156 VVVPCSRGPGSHVVVAFVIRETTRRPQAGP 67
           V +PC  G GSHV V  V R    RP++ P
Sbjct: 165 VELPCGMGVGSHVTV--VARPRPARPESEP 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,855,124
Number of Sequences: 37544
Number of extensions: 349761
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)