Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0774.Seq
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 159 LVVVPCSRGPGSHVVVAFVIRE 94
           LV+VPC    G+ +V+  V+RE
Sbjct: 193 LVIVPCLTLFGNVLVILAVVRE 214


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 651 FPSLFSIASTSPR 689
           FPSL+ +A+TSP+
Sbjct: 392 FPSLYPMATTSPQ 404


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 120 RVNPGPDCKGP 152
           R NPGP  KGP
Sbjct: 55  RRNPGPGSKGP 65


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 223 HRPRRGKGPHH 191
           + P RG  PHH
Sbjct: 326 YHPHRGSSPHH 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,011
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)