Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0774.Seq
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s...    31   1.0  
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s...    31   1.0  
At5g17170.1 68418.m02012 rubredoxin family protein contains Pfam...    29   3.1  

>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 484

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 414 WVHEREVKSRIREAFSTLPFQTR---IAISNIWRP*TMRVFDNK 292
           +VH+ EVK+ +   F    FQ        +N+WR  TM +  NK
Sbjct: 256 YVHDVEVKNELPSTFKAYRFQQHRWSCGPANLWRKMTMEILQNK 299


>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 556

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 414 WVHEREVKSRIREAFSTLPFQTR---IAISNIWRP*TMRVFDNK 292
           +VH+ EVK+ +   F    FQ        +N+WR  TM +  NK
Sbjct: 328 YVHDVEVKNELPSTFKAYRFQQHRWSCGPANLWRKMTMEILQNK 371


>At5g17170.1 68418.m02012 rubredoxin family protein contains Pfam
           profile PF00301: Rubredoxin
          Length = 271

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 59  APAGPACGRRVVSRITKATTTCEPGPRLQGTTTRL 163
           A +G   G  V S  TK TTT  P P+L  + + L
Sbjct: 2   ATSGAISGATVSSFFTKTTTTSNPSPKLHSSASLL 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,114
Number of Sequences: 28952
Number of extensions: 288143
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)