Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0773.Seq
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    29   0.70 
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    27   2.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   2.8  
SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    27   2.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.7  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = +3

Query: 72  ACGRRVVSRITKATTTCEPGPRLQGTTTRLITFTN*IHVVVRTLAASRTRERFFS*H*VK 251
           AC RR V +I        P P         I+  N   V  +TLA S  + R  S   +K
Sbjct: 14  ACFRRFVHQIPTIYALSTP-PGTSAVAIVRISGPNACKVA-KTLAGSVPKPRIASLRTIK 71

Query: 252 HEVNIA*LKA*LIIYYQRPALF 317
           H V    +   L++Y+++P+ F
Sbjct: 72  HPVRSEVIDKALMLYFKKPSSF 93


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 167 RNESCGGPLQSGPGFTRSCSFCNS 96
           R +S  G +  GP F   CSFCN+
Sbjct: 153 RLQSLEGKVAYGPNFKLHCSFCNA 176


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 552  QRSSCPSTKHKTVAPFVKKYIVYFSKSFQTQQKFPSLFSIASTSP 686
            QR S P T+   +  +++K +   +  +Q Q+K  S+FS+A T+P
Sbjct: 1150 QRISNPVTRFP-LPDWLQKRVAVLNSKYQ-QKKIDSIFSLAPTNP 1192


>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 133 GPGSHVVVAFVIRETTRRPQAGPAGARSA 47
           GP S +     + + T+   +GPAGAR+A
Sbjct: 20  GPKSQIRRRAAVEKNTKESNSGPAGARAA 48


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = -1

Query: 650 FLLCLKRFRKINNIFFYKWCYC----FVFSR---WTA*TLLLPLYLRVFNNIHKVVVLNL 492
           F++    F  ++ +FF+  C C    F+FS     +   L LPL LRVF+ + ++  L  
Sbjct: 143 FIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLSRLPRLFC 202

Query: 491 FGLRK 477
             L+K
Sbjct: 203 LCLQK 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,891
Number of Sequences: 5004
Number of extensions: 57659
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)