Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0773.Seq
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)                   28   9.1  
SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)                    28   9.1  

>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 280 RN*SFIIKDPHCLWPPYVTNSYACLKRQRGKRFTYPRFDLSLVNPFGTM 426
           RN + I   P   WPPY T SY  ++   G  F   R ++     +GT+
Sbjct: 116 RNTTAIPPRPTTWWPPYTTPSYNPVRLVNGSSFNEGRVEIYHNGTWGTV 164



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 280 RN*SFIIKDPHCLWPPYVTNSYACLKRQRGKRFTYPRFDLSLVNPFGTM 426
           RN + I   P   WPPY T SY  ++   G  F   R ++     +GT+
Sbjct: 242 RNTTAIPPRPTTWWPPYTTPSYNPVRLVNGSSFNEGRVEIYHNGTWGTV 290



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 280 RN*SFIIKDPHCLWPPYVTNSYACLKRQRGKRFTYPRFDLSLVNPFGTM 426
           RN + I   P   WPPY T SY  ++   G  F   R ++     +GT+
Sbjct: 368 RNTTAIPPRPTTWWPPYTTPSYNPVRLVNGSSFNEGRVEIYHNGTWGTV 416


>SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)
          Length = 319

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 482 RKVQNRPERMLKQYKISKFIVPNGFTSERSN 390
           RK+   PE + K+Y  S FI P G ++  +N
Sbjct: 247 RKLLVEPEGVRKEYTYSSFICPRGKSNHNNN 277


>SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)
          Length = 433

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -1

Query: 659 RWKFLLCLKRFRKINNIFFYKWCYCFVFSRWTA*TLLLPLYLRVFNNIHKVVVLNL 492
           RW   L +     ++ +FF +W Y F F+ W   TL L L L       K V   L
Sbjct: 16  RWLLALYISVDVIVDRLFFKRW-YSFAFTFWGLITLTLYLNLAAILTTIKYVKTRL 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,580,740
Number of Sequences: 59808
Number of extensions: 430212
Number of successful extensions: 1069
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)