Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0773.Seq
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 202  LPRRGRVSGSSLST 243
            LPRRGR S SSL T
Sbjct: 1838 LPRRGRSSRSSLRT 1851


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 202  LPRRGRVSGSSLST 243
            LPRRGR S SSL T
Sbjct: 1834 LPRRGRSSRSSLRT 1847


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 157 LVVVPCSRGPGSHVVVAFVIRE 92
           LV+VPC    G+ +V+  V+RE
Sbjct: 193 LVIVPCLTLFGNVLVILAVVRE 214


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 651 FPSLFSIASTSPR 689
           FPSL+ +A+TSP+
Sbjct: 392 FPSLYPMATTSPQ 404


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 118 RVNPGPDCKGP 150
           R NPGP  KGP
Sbjct: 55  RRNPGPGSKGP 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,772
Number of Sequences: 438
Number of extensions: 4535
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)