Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0771.Seq
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DEI7 Cluster: Homer homolog 1; n=8; Clupeocephala|Rep...    37   0.54 
UniRef50_Q86YM7 Cluster: Homer protein homolog 1; n=40; Tetrapod...    36   0.95 
UniRef50_Q55GI3 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_Q4XRT0 Cluster: Putative uncharacterized protein; n=4; ...    33   5.1  
UniRef50_O51291 Cluster: Probable inorganic polyphosphate/ATP-NA...    33   6.7  

>UniRef50_Q6DEI7 Cluster: Homer homolog 1; n=8; Clupeocephala|Rep:
           Homer homolog 1 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 398

 Score = 36.7 bits (81), Expect = 0.54
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 539 HTERINLYYRCTVNQSNWLPTSKICVLIKYFNDNTLIVFELINL 670
           ++ R +++      + NW+PTSK  V + YF D+T  V+ +I+L
Sbjct: 45  YSTRAHVFQVDPSTKKNWMPTSKHAVTVSYFYDSTRNVYRIISL 88


>UniRef50_Q86YM7 Cluster: Homer protein homolog 1; n=40;
           Tetrapoda|Rep: Homer protein homolog 1 - Homo sapiens
           (Human)
          Length = 354

 Score = 35.9 bits (79), Expect = 0.95
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 581 QSNWLPTSKICVLIKYFNDNTLIVFELINL 670
           + NW+PTSK  V + YF D+T  V+ +I+L
Sbjct: 21  KKNWVPTSKHAVTVSYFYDSTRNVYRIISL 50


>UniRef50_Q55GI3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1013

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 22/60 (36%), Positives = 32/60 (53%)
 Frame = +2

Query: 497 LSKSRLPALIIDDSHTERINLYYRCTVNQSNWLPTSKICVLIKYFNDNTLIVFELINLTV 676
           L  SR+P  I D +  E  N      +N +N+LP S I   I+ F +NT+   E+INL +
Sbjct: 580 LLTSRIPQTI-DLNLIENENENNNININNNNYLPNSLIIKFIQTFWENTIKRNEIINLNL 638


>UniRef50_Q4XRT0 Cluster: Putative uncharacterized protein; n=4;
           cellular organisms|Rep: Putative uncharacterized protein
           - Plasmodium chabaudi
          Length = 1593

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +1

Query: 76  QLTKHSPKPENYTMCLFLFFTSKHGVWCY*PVYKLKLNF*FANKFDARRIVSIFTITLFF 255
           ++ K     + Y +  + +F  K  +  Y  +Y LK N    +K +A+ I+ I+T  L  
Sbjct: 263 EMNKKFTVKKYYNLLFYAYFLYKIKMVIYMYLYPLKCNSIMNDKIEAQTIIDIYTNILTD 322

Query: 256 YT*VVYY 276
           Y  ++YY
Sbjct: 323 YKNILYY 329


>UniRef50_O51291 Cluster: Probable inorganic polyphosphate/ATP-NAD
           kinase (EC 2.7.1.23) (Poly(P)/ATP NAD kinase); n=4;
           Borrelia burgdorferi group|Rep: Probable inorganic
           polyphosphate/ATP-NAD kinase (EC 2.7.1.23) (Poly(P)/ATP
           NAD kinase) - Borrelia burgdorferi (Lyme disease
           spirochete)
          Length = 279

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 687 NVMSTVKFINSNTINV-LSLKYFINTQIFDVGNQLD*FTVQR*YKLIRSVCESSIIKAGN 511
           N + +   I  N + V L  KYF+   + DVG  L  F  +    LI    + +++ A N
Sbjct: 10  NTLKSGASILGNDVKVYLETKYFVEVVLIDVGRPLFSFPKENFLFLITLGGDGTVLLAVN 69

Query: 510 LLLDND 493
           LLL+N+
Sbjct: 70  LLLENE 75


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,035,346
Number of Sequences: 1657284
Number of extensions: 12598484
Number of successful extensions: 24292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24285
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)