Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0771.Seq
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30082| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_40545| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_30082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 149 PCFEVKNKNKHIV*FSGFGECFVSCKHFYVLGY 51
           P F VK +    V  +G G+C V C  FY+  Y
Sbjct: 254 PMFHVKTRQVQAVDTTGAGDCLVGCLAFYLANY 286


>SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 145  HGVWCY*PVYKLKLNF*FANKFDARRIVSIFTITLFFYT*VVYYQRW 285
            +G W Y P  + + N+   N   A  +VS+F + L  YT  +   RW
Sbjct: 1110 YGRWAYKPTMRTRTNWFILNLAAADLLVSVFNMPLTTYT--ILEGRW 1154


>SB_40545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -3

Query: 232 SIQYDGHQTY------WQTKSLVLICKQVNNTKHHALR*KIKTNTLYSFRVSANAL 83
           S + +G+ TY      WQ K+    C++   +KH  +R  +  NTL S R+   A+
Sbjct: 26  SEEQNGNHTYGLPPSVWQHKAFTEDCEEPEGSKHRYVRANMLYNTLASTRLLRKAV 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,916,406
Number of Sequences: 59808
Number of extensions: 393643
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)