Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0770X.Seq
         (454 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DEI7 Cluster: Homer homolog 1; n=8; Clupeocephala|Rep...    37   0.23 
UniRef50_Q86YM7 Cluster: Homer protein homolog 1; n=40; Tetrapod...    35   0.71 
UniRef50_UPI0000DB7905 Cluster: PREDICTED: similar to Cad99C CG3...    32   6.6  

>UniRef50_Q6DEI7 Cluster: Homer homolog 1; n=8; Clupeocephala|Rep:
           Homer homolog 1 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 398

 Score = 36.7 bits (81), Expect = 0.23
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +1

Query: 247 FDKDDSHTERINLYYRCTVNQSNWLPTLKIFVLIKYFNDNTLIVFELINLD 399
           F +   ++ R +++      + NW+PT K  V + YF D+T  V+ +I+LD
Sbjct: 39  FREQPIYSTRAHVFQVDPSTKKNWMPTSKHAVTVSYFYDSTRNVYRIISLD 89


>UniRef50_Q86YM7 Cluster: Homer protein homolog 1; n=40;
           Tetrapoda|Rep: Homer protein homolog 1 - Homo sapiens
           (Human)
          Length = 354

 Score = 35.1 bits (77), Expect = 0.71
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 307 QSNWLPTLKIFVLIKYFNDNTLIVFELINLD 399
           + NW+PT K  V + YF D+T  V+ +I+LD
Sbjct: 21  KKNWVPTSKHAVTVSYFYDSTRNVYRIISLD 51


>UniRef50_UPI0000DB7905 Cluster: PREDICTED: similar to Cad99C
           CG31009-PA, partial; n=3; Endopterygota|Rep: PREDICTED:
           similar to Cad99C CG31009-PA, partial - Apis mellifera
          Length = 1556

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 250 DKDDSHTERINLYYRCTVNQSNWLPTLKIFVLIKYFNDN 366
           D+DD +   +     CTV Q+N   T+ + V +   NDN
Sbjct: 69  DRDDENLSHVVFQLSCTVKQTNKKRTIPVIVRVSDINDN 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,650,945
Number of Sequences: 1657284
Number of extensions: 7084721
Number of successful extensions: 13766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13765
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)