Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0770X.Seq
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346...    27   7.1  
02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483     27   9.3  

>08_02_0370 -
           16333471-16333526,16333821-16333912,16334553-16334671,
           16335152-16335226,16335328-16335393,16335507-16335563,
           16335640-16335689,16335774-16335944,16337057-16337183,
           16337658-16338017
          Length = 390

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 227 PKVRLPALIKTTHIQNELIYIIVAQ*ISLIGY 322
           P V L A I+  HI    IY +V + I  +GY
Sbjct: 223 PSVLLMAAIRNVHIARPTIYQVVKEMIDKMGY 254


>02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483
          Length = 475

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 DCQWNTKSIIRFSDLPII 224
           DC W  +S + FSD+P +
Sbjct: 250 DCSWTPQSSVAFSDMPAL 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,017,942
Number of Sequences: 37544
Number of extensions: 160864
Number of successful extensions: 305
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)