Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0770X.Seq
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         27   7.3  
SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 135 VIYVRCRSEEFCDCQWNTKS 194
           V+Y+RC   ++C   W+ KS
Sbjct: 360 VLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 135  VIYVRCRSEEFCDCQWNTKS 194
            V+Y+RC   ++C   W+ KS
Sbjct: 1129 VLYIRCEDPKYCPVLWHYKS 1148


>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 88  FEGDDYIQINLN*HINKKKLSKCTDCHL 5
           F    Y+++++    N+KKL KC  C+L
Sbjct: 585 FSSTSYLKLHIKSVHNEKKLFKCDQCNL 612


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,212
Number of Sequences: 59808
Number of extensions: 213265
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)