Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0770X.Seq
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50880.1 68414.m05721 F-box family protein contains Pfam PF00...    27   5.9  
At2g24230.1 68415.m02894 leucine-rich repeat transmembrane prote...    27   7.8  

>At1g50880.1 68414.m05721 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 279

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 226 SKSQIAGFDKDDSHTERIN--LYYRCTVNQSNWLPTLKIFVLIKYFNDNTLIVFE 384
           ++ Q+ G    D+  + IN  LYYR +++QSN    +   V   Y  D TL V E
Sbjct: 130 TQKQLEGNTIGDNDGQCINGVLYYRASLDQSNVDIIMSFDVSTMYNKDITLWVLE 184


>At2g24230.1 68415.m02894 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 853

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 191 VNNSFF*FTNHCPKVRLPALIK 256
           +N SFF  TN CP    PAL K
Sbjct: 424 LNRSFFGSTNSCPIAANPALFK 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,087
Number of Sequences: 28952
Number of extensions: 152931
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)