Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0769.Seq
(764 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P0AGJ4 Cluster: tRNA guanosine-2'-O-methyltransferase; ... 110 4e-23
UniRef50_A4MZ66 Cluster: ATP-dependent DNA helicase; n=1; Haemop... 100 8e-20
UniRef50_P43809 Cluster: ATP-dependent DNA helicase recG; n=221;... 99 1e-19
UniRef50_Q7VKI3 Cluster: ATP-dependent DNA helicase RecG; n=6; G... 92 2e-17
UniRef50_UPI0000DAE42A Cluster: hypothetical protein Rgryl_01000... 79 2e-13
UniRef50_O50224 Cluster: ATP-dependent DNA helicase recG; n=1; A... 69 1e-10
UniRef50_Q15Z06 Cluster: TRNA (Guanosine-2'-O-)-methyltransferas... 67 4e-10
UniRef50_Q74DJ0 Cluster: ATP-dependent DNA helicase RecG; n=9; D... 64 5e-09
UniRef50_Q21S65 Cluster: ATP-dependent DNA helicase RecG; n=1; R... 63 8e-09
UniRef50_Q2AD76 Cluster: ATP-dependent DNA helicase RecG; n=2; C... 62 2e-08
UniRef50_A5WHY7 Cluster: ATP-dependent DNA helicase RecG; n=3; P... 61 3e-08
UniRef50_Q190E5 Cluster: ATP-dependent DNA helicase RecG; n=2; D... 60 4e-08
UniRef50_Q0F3U8 Cluster: ATP-dependent DNA helicase RecG; n=1; M... 60 4e-08
UniRef50_UPI0000E87F40 Cluster: ATP-dependent DNA helicase; n=1;... 57 4e-07
UniRef50_Q2Z047 Cluster: Putative uncharacterized protein; n=1; ... 57 6e-07
UniRef50_Q1IHX8 Cluster: ATP-dependent DNA helicase RecG; n=2; A... 56 1e-06
UniRef50_Q9WY48 Cluster: ATP-dependent DNA helicase; n=4; Thermo... 56 1e-06
UniRef50_A5CVT1 Cluster: ATP-dependent DNA helicase RecG; n=2; s... 54 3e-06
UniRef50_Q8GDQ0 Cluster: ATP-dependent DNA helicase recG; n=1; H... 54 4e-06
UniRef50_Q0C0Q6 Cluster: Putative ATP-dependent DNA helicase rec... 53 9e-06
UniRef50_A0Q4S6 Cluster: ATP-dependent DNA helicase; n=11; Franc... 52 2e-05
UniRef50_Q8A0U7 Cluster: ATP-dependent DNA helicase recG; n=29; ... 52 2e-05
UniRef50_A5TVE6 Cluster: ATP-dependent DNA helicase; n=3; Fusoba... 51 4e-05
UniRef50_Q8KC51 Cluster: ATP-dependent DNA helicase RecG; n=9; C... 50 5e-05
UniRef50_A5EXY4 Cluster: ATP-dependent DNA helicase RecG; n=1; D... 50 8e-05
UniRef50_A5UZ23 Cluster: ATP-dependent DNA helicase RecG; n=5; C... 49 1e-04
UniRef50_A6C005 Cluster: ATP-dependent DNA helicase RecG; n=1; P... 47 4e-04
UniRef50_A3ZPU2 Cluster: ATP-dependent DNA helicase RecG; n=1; B... 47 6e-04
UniRef50_Q83FX8 Cluster: ATP-dependent DNA helicase; n=2; Trophe... 46 8e-04
UniRef50_A6W7R7 Cluster: DEAD/DEAH box helicase domain protein; ... 46 0.001
UniRef50_A4J6A2 Cluster: ATP-dependent DNA helicase RecG; n=3; C... 46 0.001
UniRef50_A6NQS0 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q1PZ44 Cluster: Similar to DNA helicase; n=1; Candidatu... 44 0.004
UniRef50_Q54900 Cluster: ATP-dependent DNA helicase recG; n=47; ... 44 0.004
UniRef50_A6GKK9 Cluster: ATP-dependent DNA helicase RecG; n=1; P... 44 0.005
UniRef50_Q67PM4 Cluster: ATP-dependent DNA helicase; n=3; Firmic... 42 0.017
UniRef50_Q6AFJ8 Cluster: ATP-dependent DNA helicase RecG; n=5; A... 41 0.029
UniRef50_Q1AW94 Cluster: ATP-dependent DNA helicase RecG; n=1; R... 41 0.029
UniRef50_Q08WF2 Cluster: ATP-dependent DNA helicase RecG; n=3; B... 40 0.051
UniRef50_Q88WK3 Cluster: ATP-dependent DNA helicase RecG; n=7; L... 40 0.068
UniRef50_Q6Y8C8 Cluster: Recombination and repair protein; n=8; ... 40 0.089
UniRef50_Q9RT50 Cluster: DNA helicase RecG; n=5; Bacteria|Rep: D... 39 0.16
UniRef50_Q8R9U4 Cluster: RecG-like helicase; n=9; Clostridia|Rep... 39 0.16
UniRef50_Q55681 Cluster: ATP-dependent DNA helicase recG; n=9; C... 39 0.16
UniRef50_Q6MKR1 Cluster: ATP-dependent DNA helicase RecG; n=1; B... 38 0.21
UniRef50_Q8KE14 Cluster: TRNA methyltransferase SpoU; n=9; Chlor... 38 0.36
UniRef50_Q2J6Y3 Cluster: DEAD/DEAH box helicase-like; n=4; Actin... 38 0.36
UniRef50_A6F523 Cluster: DNA internalization-related competence ... 38 0.36
UniRef50_Q0VRD7 Cluster: RNA methyltransferase, TrmH family, gro... 37 0.48
UniRef50_P96130 Cluster: ATP-dependent DNA helicase recG; n=2; T... 37 0.48
UniRef50_A6GU88 Cluster: ATP-dependent DNA helicase RecG; n=1; L... 37 0.63
UniRef50_Q0IAN6 Cluster: ATP-dependent DNA helicase RecG; n=23; ... 36 0.83
UniRef50_A4E6T7 Cluster: Putative uncharacterized protein; n=1; ... 36 0.83
UniRef50_Q7MXP4 Cluster: Ferrochelatase; n=1; Porphyromonas ging... 36 0.83
UniRef50_Q3JVA4 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q9UQ35 Cluster: Serine/arginine repetitive matrix prote... 36 1.1
UniRef50_Q2S5W6 Cluster: ATP-dependent DNA helicase RecG; n=1; S... 36 1.5
UniRef50_A5KLE5 Cluster: Putative uncharacterized protein; n=5; ... 36 1.5
UniRef50_Q8EZB0 Cluster: ATP-dependent DNA helicase recG; n=4; L... 35 1.9
UniRef50_Q38ZH7 Cluster: Putative penicillin-binding protein; n=... 35 1.9
UniRef50_A0YFN1 Cluster: TRNA (Guanosine-2'-O-)-methyltransferas... 35 2.5
UniRef50_A2FS54 Cluster: Surface antigen BspA-like; n=1; Trichom... 35 2.5
UniRef50_Q4FLY8 Cluster: ATP-dependent DNA helicase recG; n=3; B... 34 3.4
UniRef50_UPI0000DA2DC9 Cluster: PREDICTED: hypothetical protein;... 33 5.9
UniRef50_Q8XJM5 Cluster: ATP-dependent DNA helicase; n=12; Clost... 33 5.9
UniRef50_A5P4Z4 Cluster: Putative uncharacterized protein precur... 33 5.9
UniRef50_Q9UQ26 Cluster: Regulating synaptic membrane exocytosis... 33 5.9
UniRef50_Q0SJ08 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
UniRef50_A3RS25 Cluster: CzcD; n=3; Ralstonia solanacearum|Rep: ... 33 7.8
UniRef50_Q4P8D8 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
UniRef50_Q0CW06 Cluster: Predicted protein; n=1; Aspergillus ter... 33 7.8
UniRef50_O34942 Cluster: ATP-dependent DNA helicase recG; n=57; ... 33 7.8
>UniRef50_P0AGJ4 Cluster: tRNA guanosine-2'-O-methyltransferase;
n=75; Bacteria|Rep: tRNA
guanosine-2'-O-methyltransferase - Shigella flexneri
Length = 229
Score = 110 bits (264), Expect = 4e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = -3
Query: 699 KAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG 550
+AEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG
Sbjct: 180 EAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQAAG 229
Score = 50.4 bits (115), Expect = 5e-05
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = -2
Query: 763 YEAQRQRQNAGMYLRENSMLPES 695
YEAQRQRQNAGMYLRENSMLPE+
Sbjct: 159 YEAQRQRQNAGMYLRENSMLPEA 181
>UniRef50_A4MZ66 Cluster: ATP-dependent DNA helicase; n=1;
Haemophilus influenzae 22.1-21|Rep: ATP-dependent DNA
helicase - Haemophilus influenzae 22.1-21
Length = 138
Score = 99.5 bits (237), Expect = 8e-20
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNI 325
L+GVGAA+SNKLAKI + +QDLL HLP+RYEDRT + PI L P Y T+EG V C +
Sbjct: 14 LSGVGAAISNKLAKIGIQNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEV 73
Query: 324 SFGGRRMMTCQISDGSGILTMRF 256
+FG R +++ +SDG+ + +RF
Sbjct: 74 AFGRRPILSVSLSDGTSKIMLRF 96
>UniRef50_P43809 Cluster: ATP-dependent DNA helicase recG; n=221;
Bacteria|Rep: ATP-dependent DNA helicase recG -
Haemophilus influenzae
Length = 693
Score = 98.7 bits (235), Expect = 1e-19
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNI 325
L+GVGAA+SNKLAKI +H +QDLL HLP+RYEDRT + I L P Y T+EG V C +
Sbjct: 14 LSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITLIANLRPEQYFTIEGIVQTCEV 73
Query: 324 SFGGRRMMTCQISDGSGILTMRF 256
+FG R +++ +SDG+ + +RF
Sbjct: 74 AFGRRPILSVSLSDGTSKIMLRF 96
Score = 97.9 bits (233), Expect = 2e-19
Identities = 48/85 (56%), Positives = 61/85 (71%)
Frame = -2
Query: 256 FNFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTE 77
FNF+A M+NS RV A+GE KRG++ E+ HPEY++ D + L+ETLTP+Y TTE
Sbjct: 97 FNFNAGMRNSFQVGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTE 156
Query: 76 GVKQATLRKLTDQALDLLDTCAIEE 2
G+KQ +LRKLTDQAL LLD I E
Sbjct: 157 GLKQNSLRKLTDQALALLDKVQIAE 181
>UniRef50_Q7VKI3 Cluster: ATP-dependent DNA helicase RecG; n=6;
Gammaproteobacteria|Rep: ATP-dependent DNA helicase RecG
- Haemophilus ducreyi
Length = 697
Score = 91.9 bits (218), Expect = 2e-17
Identities = 46/85 (54%), Positives = 59/85 (69%)
Frame = -2
Query: 256 FNFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTE 77
FNF+A MKN A RV A+GE KRG++ AE+ HPEY++ L E+LTP+Y TTE
Sbjct: 97 FNFNAGMKNGFAVGVRVKAFGEIKRGRFMAEIHHPEYQIIRHNQPLTLAESLTPIYTTTE 156
Query: 76 GVKQATLRKLTDQALDLLDTCAIEE 2
G+KQ +LRKLT+QAL LL+ I E
Sbjct: 157 GLKQNSLRKLTEQALALLNKIQIAE 181
Score = 77.4 bits (182), Expect = 4e-13
Identities = 32/83 (38%), Positives = 54/83 (65%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNI 325
L GVG A++ KL ++ ++ VQDLL HLP+RYEDRT + I ++ P + T+EG+V +
Sbjct: 14 LAGVGTAIAEKLHRLAIYNVQDLLFHLPIRYEDRTRITAIADVRPAHFVTIEGQVQLTEV 73
Query: 324 SFGGRRMMTCQISDGSGILTMRF 256
+ R ++ +SDG+ + ++F
Sbjct: 74 EYSRRAILAVVLSDGTSKIMLKF 96
>UniRef50_UPI0000DAE42A Cluster: hypothetical protein
Rgryl_01000298; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000298 - Rickettsiella
grylli
Length = 721
Score = 78.6 bits (185), Expect = 2e-13
Identities = 39/95 (41%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = -3
Query: 519 LSHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV 340
+S + LTGVG +S+ L K +H +QDLLLHLPLRYE+RT L PI + G +A + G +
Sbjct: 21 ISCTQLTGVGPKISHYLHKCGIHHLQDLLLHLPLRYENRTQLTPIRSVREGQHALITGII 80
Query: 339 LNCNISFGGRRMMTCQISDGSGILTMR-FSISARQ 238
+ + ++ +C++SD +G +T+R F + A+Q
Sbjct: 81 QDHPLRIKNKKSYSCKLSDETGSVTLRFFHLKAKQ 115
Score = 41.9 bits (94), Expect = 0.017
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = -2
Query: 211 RVLAYG--EAKRGKY-GAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTD 41
R+L +G A++ ++ EMIHP+Y +P L LT +YP+T G+ Q KL
Sbjct: 124 RLLCFGPIHAQKNRFFEREMIHPDYEFLRPHQSPLLPPYLTSIYPSTPGMTQRLWHKLIT 183
Query: 40 QALDLL 23
Q LL
Sbjct: 184 QVFHLL 189
>UniRef50_O50224 Cluster: ATP-dependent DNA helicase recG; n=1;
Acidithiobacillus ferrooxidans|Rep: ATP-dependent DNA
helicase recG - Thiobacillus ferrooxidans
(Acidithiobacillus ferrooxidans)
Length = 652
Score = 68.9 bits (161), Expect = 1e-10
Identities = 38/105 (36%), Positives = 53/105 (50%)
Frame = -3
Query: 516 SHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVL 337
S S L GVG AL +L ++L VQD+L HLP RY+DR H+ + L G + GE++
Sbjct: 35 SVSALRGVGPALVPRLQHMDLWRVQDVLFHLPSRYQDRRHIASMATLQAGQECAILGEIV 94
Query: 336 NCNISFGGRRMMTCQISDGSGILTMRFSISARQ*KIAWRRSAVYW 202
+ GGR +SDGSG L +R + W+ W
Sbjct: 95 RVDHQRGGREQWLVTVSDGSGRLQIRLFHMTVALRAQWQVGRRLW 139
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/80 (40%), Positives = 49/80 (61%)
Frame = -2
Query: 259 LFNFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTT 80
LF+ + A++ RR+ +GE + G +G EMIHPE+++ D+ + LTP YP++
Sbjct: 121 LFHMTVALRAQWQVGRRLWCFGELRGGFHGLEMIHPEWQM-ADVPQFQAPRHLTPFYPSS 179
Query: 79 EGVKQATLRKLTDQALDLLD 20
EG+ QA R+ QAL LLD
Sbjct: 180 EGITQAQWRRWMAQALTLLD 199
>UniRef50_Q15Z06 Cluster: TRNA (Guanosine-2'-O-)-methyltransferase;
n=1; Pseudoalteromonas atlantica T6c|Rep: TRNA
(Guanosine-2'-O-)-methyltransferase - Pseudoalteromonas
atlantica (strain T6c / BAA-1087)
Length = 256
Score = 67.3 bits (157), Expect = 4e-10
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = -3
Query: 693 EQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQ 559
E QR+LFEGG+PVL+ V + KGL YPH+++ G I ADA WW MQ
Sbjct: 185 ECQRVLFEGGFPVLSNVCRNKGLDYPHIDEGGNIVADASWWQKMQ 229
>UniRef50_Q74DJ0 Cluster: ATP-dependent DNA helicase RecG; n=9;
Desulfuromonadales|Rep: ATP-dependent DNA helicase RecG
- Geobacter sulfurreducens
Length = 714
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCN 328
F+ GVG ++ LA+ + TV+D L LP RYEDR + P+ L PG GEV++ +
Sbjct: 18 FIKGVGPKMAEILARKGIVTVEDALYLLPNRYEDRRQVVPMNRLRPGETCVFAGEVVSAD 77
Query: 327 I--SFGGRRMMTCQISDGSGILTMR-FSISARQ*KIAWR 220
+ + GGRR D SG+++ + F+ A + AW+
Sbjct: 78 VVTTKGGRRFFEVMARDASGVMSFKWFNYHAAFMRKAWQ 116
Score = 36.7 bits (81), Expect = 0.63
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Frame = -2
Query: 256 FNFSAA-MKNSLAAVRRVLAYGEAKRGKYGAEMIHPE--YRVQGDLSTPELQET------ 104
FN+ AA M+ + RR + G+ + E+ HP+ + +G+ +
Sbjct: 104 FNYHAAFMRKAWQPGRRGIFTGQVTQYGLQREVHHPDVDWLAEGETVEAAMARDPVGFGR 163
Query: 103 LTPVYPTTEGVKQATLRKLTDQALDLLDTC 14
L PVYP TEG+ Q LRK+ + +D C
Sbjct: 164 LVPVYPLTEGLNQKALRKVMKEVVDRFAPC 193
>UniRef50_Q21S65 Cluster: ATP-dependent DNA helicase RecG; n=1;
Rhodoferax ferrireducens T118|Rep: ATP-dependent DNA
helicase RecG - Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118)
Length = 747
Score = 62.9 bits (146), Expect = 8e-09
Identities = 29/72 (40%), Positives = 39/72 (54%)
Frame = -3
Query: 471 LAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQ 292
L K+ L DL LHLPLRYED T + + E+ G A VEG V +C + G R +
Sbjct: 25 LRKLGLERAIDLALHLPLRYEDETRIERLSEVREGEVAQVEGVVTHCEVKLSGHRQLLVT 84
Query: 291 ISDGSGILTMRF 256
+ DG+ +RF
Sbjct: 85 LDDGTDTCLLRF 96
Score = 51.6 bits (118), Expect = 2e-05
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = -2
Query: 256 FNFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTE 77
F F + + +LA R+ GE K G G M+HP ++ G EL LTP+YPT
Sbjct: 97 FTFYPSSQKALAVGNRIRVRGEVKGGFGGLTMMHPAFKSAGG----ELAVALTPIYPTVA 152
Query: 76 GVKQATLRKLTDQAL---DLLDTCAIE 5
G+ QA LR+ + +L DT +E
Sbjct: 153 GLPQAYLRRAVQGGVARAELSDTVPLE 179
>UniRef50_Q2AD76 Cluster: ATP-dependent DNA helicase RecG; n=2;
Clostridia|Rep: ATP-dependent DNA helicase RecG -
Halothermothrix orenii H 168
Length = 683
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = -3
Query: 516 SHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVL 337
S F+ GVG + L K+N++TV+DLL + P Y+DR+ PI + PG TV+GE++
Sbjct: 8 SVQFVRGVGPRYAEVLKKLNINTVKDLLYYFPRTYQDRSQFTPIKYIRPGYEVTVQGEII 67
Query: 336 NC--NISFGGRRMMTCQISDGSGIL 268
N G ++ I+DGS +L
Sbjct: 68 KIEENKIRKGLSILKATITDGSDVL 92
>UniRef50_A5WHY7 Cluster: ATP-dependent DNA helicase RecG; n=3;
Psychrobacter|Rep: ATP-dependent DNA helicase RecG -
Psychrobacter sp. PRwf-1
Length = 747
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/83 (39%), Positives = 48/83 (57%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNI 325
L GVG+ + +L ++ + + DLLLHLP YEDR+ L I +L G A +EG+V +
Sbjct: 30 LAGVGSKIEGQLEQLGVSRLFDLLLHLPRDYEDRSRLVNISDLQDGQSALIEGQVTYVDN 89
Query: 324 SFGGRRMMTCQISDGSGILTMRF 256
GG MT I D +G + +RF
Sbjct: 90 KRGG---MTVVIEDATGAIQLRF 109
Score = 50.0 bits (114), Expect = 6e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = -2
Query: 256 FNFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTE 77
F A++ ++ R+ +GE K +YG +M HPEY + P + L P+YP +
Sbjct: 110 FKVYASLVQTMTLGTRLRLFGEVKISRYGMQMAHPEYNMV-TAGAPVVNTGLQPIYPAVK 168
Query: 76 GVKQATLRKLTDQAL 32
G+ Q LR L AL
Sbjct: 169 GLHQNKLRTLVKLAL 183
>UniRef50_Q190E5 Cluster: ATP-dependent DNA helicase RecG; n=2;
Desulfitobacterium hafniense|Rep: ATP-dependent DNA
helicase RecG - Desulfitobacterium hafniense (strain
DCB-2)
Length = 796
Score = 60.5 bits (140), Expect = 4e-08
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = -3
Query: 516 SHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVL 337
S FL GVG + LA+I LHTV+DL + P RYEDR+ L IGEL G A+V G+V+
Sbjct: 135 SLQFLKGVGPERAKLLAQIGLHTVKDLFFYFPRRYEDRS-LQSIGELKDGELASVAGKVV 193
Query: 336 NCNISFGGRRMMTCQI-SDGSGILTMRFS 253
I+ G +++ I DG + + F+
Sbjct: 194 AGQIARGKLKVVKLSIEQDGRLVYAVWFN 222
>UniRef50_Q0F3U8 Cluster: ATP-dependent DNA helicase RecG; n=1;
Mariprofundus ferrooxydans PV-1|Rep: ATP-dependent DNA
helicase RecG - Mariprofundus ferrooxydans PV-1
Length = 671
Score = 60.5 bits (140), Expect = 4e-08
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = -3
Query: 510 SFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNC 331
S + GVG AL +L + ++ T+ DLLLHLP Y D L PI +L GV A ++G +L
Sbjct: 11 STVKGVGPALEKRLHQRDIRTLGDLLLHLPKDYIDDRQLSPIAQLCDGVSARIQGRILTK 70
Query: 330 NI-SFGGRRMMTCQISDGSGILTMRF 256
+G +R + ++D SG + + F
Sbjct: 71 EARGYGKKRQVIILLADDSGRIRLNF 96
>UniRef50_UPI0000E87F40 Cluster: ATP-dependent DNA helicase; n=1;
Methylophilales bacterium HTCC2181|Rep: ATP-dependent
DNA helicase - Methylophilales bacterium HTCC2181
Length = 677
Score = 57.2 bits (132), Expect = 4e-07
Identities = 27/74 (36%), Positives = 46/74 (62%)
Frame = -3
Query: 477 NKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMT 298
+KL K+ + ++ DLLLHLPL+Y D+T + I ++ PG ++G+V ++ R+ +T
Sbjct: 12 SKLRKLGIKSLFDLLLHLPLKYLDKTQIDLIQDISPGGSYQIQGKVTYVKTAYQPRKNLT 71
Query: 297 CQISDGSGILTMRF 256
I D +G L +RF
Sbjct: 72 VVIEDATGSLQLRF 85
Score = 39.9 bits (89), Expect = 0.068
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = -2
Query: 253 NFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEG 74
NF ++ + V AYGE EMIHP+Y + ++ L + LTP+Y T G
Sbjct: 87 NFYSSQSRQFSEGVIVRAYGEVNPKSLIKEMIHPDYEI--IVTDKPLPKCLTPIYALTRG 144
Query: 73 VKQATLRKLTDQALD 29
+ Q ++ + D
Sbjct: 145 LGQKSILNFVKKTFD 159
>UniRef50_Q2Z047 Cluster: Putative uncharacterized protein; n=1;
uncultured bacterium|Rep: Putative uncharacterized
protein - uncultured bacterium
Length = 694
Score = 56.8 bits (131), Expect = 6e-07
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = -3
Query: 519 LSHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV 340
+S F+ GVG A++ + TV+DL+ P RYEDR H+ P+ +++ G + TV G+V
Sbjct: 7 VSVQFVKGVGPQKKKLFARLGIETVEDLMYFFPRRYEDRRHIVPLAKVVVGQWQTVRGKV 66
Query: 339 LNCNIS---FGGRRMMTCQISDGSG 274
L + + + I DGSG
Sbjct: 67 LLGEARKSWYTKKHVFEVAIDDGSG 91
Score = 39.9 bits (89), Expect = 0.068
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2
Query: 214 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQ-ETLTPVYPTTEGVKQATLRKLTDQ 38
R+V+ YG+ + K +M+ PEY V + L + P+YP T+G+ Q +RK+
Sbjct: 111 RQVVCYGKVDQYKDRLQMVSPEYEVIEEDEKESLSLNRIVPMYPLTKGMTQRFIRKVVWA 170
Query: 37 AL 32
AL
Sbjct: 171 AL 172
>UniRef50_Q1IHX8 Cluster: ATP-dependent DNA helicase RecG; n=2;
Acidobacteria|Rep: ATP-dependent DNA helicase RecG -
Acidobacteria bacterium (strain Ellin345)
Length = 753
Score = 56.0 bits (129), Expect = 1e-06
Identities = 33/86 (38%), Positives = 47/86 (54%)
Frame = -3
Query: 516 SHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVL 337
S ++ G+G + LA + TV+DLL +LP RYEDR + IGEL PG A+V EV
Sbjct: 42 SVQYVKGIGPRTAETLATKGISTVEDLLYYLPFRYEDRLNPRGIGELRPGEMASVVAEVR 101
Query: 336 NCNISFGGRRMMTCQISDGSGILTMR 259
+ F R Q++ G G T++
Sbjct: 102 TSGL-FRTRAGPMFQLTVGQGHQTLK 126
>UniRef50_Q9WY48 Cluster: ATP-dependent DNA helicase; n=4;
Thermotogaceae|Rep: ATP-dependent DNA helicase -
Thermotoga maritima
Length = 780
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCN 328
+ GVG KL K+ + T++DLL P YEDR ++ + +LLPG T +G++++
Sbjct: 119 YAKGVGPNRKKKLKKLGIETLRDLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVE 178
Query: 327 I-SFGGRRMMTCQISDG 280
F ++T +SDG
Sbjct: 179 TKKFQNMNILTAVLSDG 195
>UniRef50_A5CVT1 Cluster: ATP-dependent DNA helicase RecG; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent DNA
helicase RecG - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 688
Score = 54.4 bits (125), Expect = 3e-06
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = -2
Query: 256 FNFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTE 77
F F+ K + + +GE K G+ E+ +PEYR+ L++TL+P+YP T
Sbjct: 95 FYFNQYQKQNFIRGDIIQCFGEIKMGQNSLEIHNPEYRLISKGQANLLEKTLSPIYPLTA 154
Query: 76 GVKQATLRKLTDQALDLL 23
++QA ++K D AL++L
Sbjct: 155 NIRQAQMKKWIDTALEVL 172
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNI 325
L G+G KL I + ++ LL LP Y+D+T L + ++ G ++ +
Sbjct: 11 LDGLGPKTQQKLNAIGIFNLEHLLFQLPTHYQDKTKLAKLNQVQIGDEVLIQLTIKYTEQ 70
Query: 324 SFGGRRMMTCQISDGS 277
++ + C +SD +
Sbjct: 71 VSTHQKQLLCYLSDSN 86
>UniRef50_Q8GDQ0 Cluster: ATP-dependent DNA helicase recG; n=1;
Heliobacillus mobilis|Rep: ATP-dependent DNA helicase
recG - Heliobacillus mobilis
Length = 807
Score = 54.0 bits (124), Expect = 4e-06
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGEL-LPGVYATVEGEVLNC 331
FL GVG + L ++ + T+QDLL HLP RY DR+ L I ++ PG Y V G V+
Sbjct: 134 FLRGVGPQRAAALKRLGIETIQDLLFHLPHRYIDRSQLLSIAQIRYPGDY-NVSG-VIRA 191
Query: 330 NISFGGRR---MMTCQISDGSGIL 268
+ RR ++ Q+ DG+GIL
Sbjct: 192 YQQYNPRRGLAVIKGQLDDGTGIL 215
>UniRef50_Q0C0Q6 Cluster: Putative ATP-dependent DNA helicase recG;
n=1; Hyphomonas neptunium ATCC 15444|Rep: Putative
ATP-dependent DNA helicase recG - Hyphomonas neptunium
(strain ATCC 15444)
Length = 692
Score = 52.8 bits (121), Expect = 9e-06
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = -3
Query: 504 LTGVGAALSNKLAK-INLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCN 328
LTGVG ++ L K + TV DL+LHLP R+ DR E +PG TV+GEV +
Sbjct: 16 LTGVGPKMTPLLQKLVGGTTVWDLVLHLPDRWLDRRVRANFDETVPGEVVTVKGEVHAYH 75
Query: 327 ISFGGRRMMTCQISDGSGILTMRF 256
F R Q+ D +G LT+ +
Sbjct: 76 QPFNDRSPHRVQLVDSTGFLTLSY 99
>UniRef50_A0Q4S6 Cluster: ATP-dependent DNA helicase; n=11;
Francisella tularensis|Rep: ATP-dependent DNA helicase -
Francisella tularensis subsp. novicida (strain U112)
Length = 679
Score = 52.0 bits (119), Expect = 2e-05
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = -3
Query: 498 GVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISF 319
GVG A LAK N+H DLL P Y+D + PI L+ G + ++G V N
Sbjct: 8 GVGEATIKALAKYNIHDPNDLLTIFPKDYKDTRVITPINHLVAGKRSLIQGRVTNLTYKK 67
Query: 318 GGRRMMTCQISDGSGILTM 262
G++ + I+D +G ++
Sbjct: 68 FGKKFLRFNINDSTGFCSV 86
>UniRef50_Q8A0U7 Cluster: ATP-dependent DNA helicase recG; n=29;
Bacteroidetes/Chlorobi group|Rep: ATP-dependent DNA
helicase recG - Bacteroides thetaiotaomicron
Length = 698
Score = 51.6 bits (118), Expect = 2e-05
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Frame = -3
Query: 507 FLTGVG---AALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGV-YATVEGEV 340
F++GVG AA+ NK ++ ++++ DL+ + P +Y DR+ +Y I E+ + Y ++GE+
Sbjct: 11 FISGVGPQKAAVLNK--ELEIYSLYDLIYYFPYKYVDRSRIYYIHEIDGNMPYIQLKGEI 68
Query: 339 LNC-NISFGGRRMMTCQISDGSGILTM 262
L I G +R +T SDG+GI+ +
Sbjct: 69 LGFETIGEGRQRRLTAHFSDGTGIVDL 95
>UniRef50_A5TVE6 Cluster: ATP-dependent DNA helicase; n=3;
Fusobacterium nucleatum|Rep: ATP-dependent DNA helicase
- Fusobacterium nucleatum subsp. polymorphum ATCC 10953
Length = 689
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = -3
Query: 483 LSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLN-CNISF-GGR 310
LSN L + ++TV DL+ + P Y+DRT++ IGEL Y ++ V++ N++ G+
Sbjct: 25 LSN-LKSLGINTVYDLIYYFPRAYDDRTNIKKIGELKFNEYVVLKANVMSVVNLTVRSGK 83
Query: 309 RMMTCQISDGSGIL 268
+++ +SDG+GI+
Sbjct: 84 KIVKAMVSDGTGIM 97
Score = 33.5 bits (73), Expect = 5.9
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -2
Query: 238 MKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQAT 59
+K SL L G+ K+ ++I+PEY++ E L P+Y + + + Q +
Sbjct: 107 IKKSLKIGEEYLFIGQTKKSAV-FQLINPEYKLFSGQQKASESEIL-PIYSSNKNITQNS 164
Query: 58 LRKLTDQAL 32
LRKL ++ L
Sbjct: 165 LRKLVEKFL 173
>UniRef50_Q8KC51 Cluster: ATP-dependent DNA helicase RecG; n=9;
Chlorobiaceae|Rep: ATP-dependent DNA helicase RecG -
Chlorobium tepidum
Length = 704
Score = 50.4 bits (115), Expect = 5e-05
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNI 325
+ GVG + LA+ + ++ DL P RY DRT + IG L G TV G V
Sbjct: 10 IKGVGPKRAVILAEAGIRSIADLYDCFPRRYLDRTTIKKIGALRDGETVTVVGSVTGTRF 69
Query: 324 SFGGR--RMMTCQISDGSGILTM 262
GGR QI+DGSG+L +
Sbjct: 70 EGGGRGGSRFKAQITDGSGVLEL 92
>UniRef50_A5EXY4 Cluster: ATP-dependent DNA helicase RecG; n=1;
Dichelobacter nodosus VCS1703A|Rep: ATP-dependent DNA
helicase RecG - Dichelobacter nodosus (strain VCS1703A)
Length = 684
Score = 49.6 bits (113), Expect = 8e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = -3
Query: 465 KINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQIS 286
+ ++ T++DLLLHLP RYED + L + +L G A V G+V+ I R ++T +
Sbjct: 23 RADVKTIRDLLLHLPQRYEDHSRLTAMNDLQDGQTAFVHGQVIRAEIQQYRRPVLTVLLR 82
Query: 285 DGSG 274
D +G
Sbjct: 83 DRAG 86
Score = 35.5 bits (78), Expect = 1.5
Identities = 32/112 (28%), Positives = 46/112 (41%)
Frame = -2
Query: 358 HGGRRSAELQYLLRRSADDDLPDQRRFRHPHHALFNFSAAMKNSLAAVRRVLAYGEAKRG 179
HG AE+Q RR L R + F+F + A R L YG+ R
Sbjct: 61 HGQVIRAEIQQY-RRPVLTVLLRDRAGGELYLRYFHFYPNQIKTFRAGRWGLFYGKINRS 119
Query: 178 KYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLL 23
EM HPE + P L +T P+Y + +G+ QA ++ + L L
Sbjct: 120 FALPEMSHPEITWLTNEHLPPLPKTWYPIYSSVQGLTQAHWQQAINDVLKQL 171
>UniRef50_A5UZ23 Cluster: ATP-dependent DNA helicase RecG; n=5;
Chloroflexi (class)|Rep: ATP-dependent DNA helicase RecG
- Roseiflexus sp. RS-1
Length = 842
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -3
Query: 498 GVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCN--- 328
G+ ++ ++ + TV+DLL H P RY+D T I EL PG T+ EVL+
Sbjct: 131 GITRIMAQSFRRLGVRTVRDLLYHFPHRYDDFTSHRTIAELQPGAVETIVAEVLDARTVP 190
Query: 327 ISFGGRRMMTCQISDGSGILTMRF 256
+ GG R + + D +G L + F
Sbjct: 191 MKSGGTR-LDVLVGDETGTLKVVF 213
>UniRef50_A6C005 Cluster: ATP-dependent DNA helicase RecG; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent DNA
helicase RecG - Planctomyces maris DSM 8797
Length = 691
Score = 47.2 bits (107), Expect = 4e-04
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV--LN 334
FL GVG L K+ + TV+DLL HLP D T + P+ EL A+V G+V L+
Sbjct: 12 FLNGVGPDRGELLGKLGIQTVEDLLWHLPRSVLDLTDVRPVNELEEDQPASVCGKVVDLD 71
Query: 333 CNISFGGRRMMTCQISDGSGIL 268
GR + + G+G L
Sbjct: 72 ARTISRGRTITAILLDCGTGFL 93
>UniRef50_A3ZPU2 Cluster: ATP-dependent DNA helicase RecG; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent DNA
helicase RecG - Blastopirellula marina DSM 3645
Length = 697
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV 340
FL GVG + KLAK+N+ T DLL P Y+D + PI +L+ A+V G V
Sbjct: 19 FLKGVGPQRAEKLAKLNIFTALDLLFFFPRDYQDVRDVIPIAQLVEDEIASVIGTV 74
Score = 38.7 bits (86), Expect = 0.16
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = -2
Query: 214 RRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 35
RRVL G+ EM HP V D E+ + PVY TEG++Q +R+L A
Sbjct: 118 RRVLMSGKPTLNGLRWEMAHPIAEVLED-EQEEIGGKILPVYSLTEGIRQGAMRRLVHHA 176
Query: 34 LD 29
++
Sbjct: 177 VE 178
>UniRef50_Q83FX8 Cluster: ATP-dependent DNA helicase; n=2;
Tropheryma whipplei|Rep: ATP-dependent DNA helicase -
Tropheryma whipplei (strain Twist) (Whipple's bacillus)
Length = 768
Score = 46.4 bits (105), Expect = 8e-04
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Frame = -3
Query: 522 MLSHSFLTGVGAALSNKLAKI-----NLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYA 358
++ H F + V K+A + + V DLL + P RY R L + EL+PG
Sbjct: 79 VMEHVFFSDVSVHTGKKMASLLAKEFGISRVIDLLTYYPRRYICRGKLTKLSELIPGDEV 138
Query: 357 TVEGEVLNC--NISFGGRRMMTCQISDGSGILTMRF 256
T+ G VL+ +F G ++ +SDG I+ + F
Sbjct: 139 TIVGRVLSTEQRKTFSGANFLSVTLSDGENIIQLVF 174
>UniRef50_A6W7R7 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Actinomycetales|Rep: DEAD/DEAH box helicase domain
protein - Kineococcus radiotolerans SRS30216
Length = 759
Score = 45.6 bits (103), Expect = 0.001
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = -3
Query: 462 INLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATV------EGEVLNCNISFGGRRMM 301
+ L TV+DLL HLP RY DR L PI +L+ G AT+ GE G R ++
Sbjct: 32 LGLETVRDLLWHLPRRYADRGTLTPIRDLVEGENATILAQVVKYGEPQRMRAKDGVRLVV 91
Query: 300 TCQISDGSGILTMRF 256
T + DG LTM F
Sbjct: 92 T--LGDGRDTLTMTF 104
>UniRef50_A4J6A2 Cluster: ATP-dependent DNA helicase RecG; n=3;
Clostridiales|Rep: ATP-dependent DNA helicase RecG -
Desulfotomaculum reducens MI-1
Length = 685
Score = 45.6 bits (103), Expect = 0.001
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVL 337
++ GVG + +L ++ + T DLL H P Y+DR+ + P G ATV+G V+
Sbjct: 10 YMKGVGPQRAKQLERLGIFTTWDLLYHFPREYQDRSDIRPAHSFSQGDLATVKGTVI 66
>UniRef50_A6NQS0 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 694
Score = 44.4 bits (100), Expect = 0.003
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIG---ELLPGVYATVEGEVLN 334
L G+G A + KLAK+ L TV++LL + P YEDRT + I E P A E
Sbjct: 12 LPGIGDARAAKLAKLGLATVENLLGYYPRSYEDRTKISTIDGAPEEQPVCVAAFVAETPR 71
Query: 333 CNISFGGRRMMTCQISDGSGILTMRF 256
+ G ++ +++D + ++T+ F
Sbjct: 72 VSHIRKGLELVKVKVADETAVMTVTF 97
>UniRef50_Q1PZ44 Cluster: Similar to DNA helicase; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to DNA helicase -
Candidatus Kuenenia stuttgartiensis
Length = 686
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV--LN 334
+L G+G S + ++ + TV DLL + P Y D + + I E G T++G + +
Sbjct: 11 YLNGIGPKRSKIIGRLGIQTVHDLLYYFPRDYNDFSKIQKIAEAKTGDSITIQGTINGIQ 70
Query: 333 CNISFGGRRMMTCQISDGSGIL 268
++ G+ ++ +SD +G++
Sbjct: 71 NRVARMGKTILEVFVSDETGVI 92
Score = 38.3 bits (85), Expect = 0.21
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = -2
Query: 211 RVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQAL 32
R+ +G+ KY +++ PEY + D + PVYP TE + Q+ LRK+ A+
Sbjct: 111 RLFLHGKVNSYKY-LQLLSPEYEIISDRQAGGSGWGIIPVYPLTEHISQSQLRKIIHAAI 169
>UniRef50_Q54900 Cluster: ATP-dependent DNA helicase recG; n=47;
Lactobacillales|Rep: ATP-dependent DNA helicase recG -
Streptococcus pneumoniae
Length = 671
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLN-CN 328
L GVG + K AK+ + +QDLLL+ P RYED + EL G A + G+V+ +
Sbjct: 10 LPGVGPKSAEKYAKLGIENLQDLLLYFPFRYED-FKTKQVLELEDGEKAVLSGQVVTPAS 68
Query: 327 ISFGG--RRMMTCQISDGSGILTMRF 256
+ + G R + + G + + F
Sbjct: 69 VQYYGFKRNRLRFSLKQGEVVFAVNF 94
>UniRef50_A6GKK9 Cluster: ATP-dependent DNA helicase RecG; n=1;
Plesiocystis pacifica SIR-1|Rep: ATP-dependent DNA
helicase RecG - Plesiocystis pacifica SIR-1
Length = 814
Score = 43.6 bits (98), Expect = 0.005
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -3
Query: 522 MLSHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGE 343
+ S L+GVG + KLA L +++DL LPL YEDR + E+ G A + G
Sbjct: 114 LASAQVLSGVGKRTAEKLAARGLESIEDLAYLLPLGYEDRRQTTLLSEVEEGASAVIHGV 173
Query: 342 VLNCNIS-FGGRRMMTCQI 289
+ + + GR T +I
Sbjct: 174 IRSFRQGWYSGRYSATMRI 192
>UniRef50_Q67PM4 Cluster: ATP-dependent DNA helicase; n=3;
Firmicutes|Rep: ATP-dependent DNA helicase -
Symbiobacterium thermophilum
Length = 709
Score = 41.9 bits (94), Expect = 0.017
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCN 328
+L G+G A + LAK + TV+DL+ +P Y D + + PI + G ++ G V+ +
Sbjct: 27 YLKGIGPARARDLAKQGIATVRDLIERVPRAYRDYSQIKPIAQAQNGQPESLMGTVVMVD 86
Query: 327 IS--FGGRRMMTCQISDGSG 274
G + ISDGSG
Sbjct: 87 DRRVRGNLHLTRVIISDGSG 106
>UniRef50_Q6AFJ8 Cluster: ATP-dependent DNA helicase RecG; n=5;
Actinobacteria (class)|Rep: ATP-dependent DNA helicase
RecG - Leifsonia xyli subsp. xyli
Length = 739
Score = 41.1 bits (92), Expect = 0.029
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -3
Query: 504 LTGV-GAALSNKLAK-INLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNC 331
LTGV G + K TV DLL H P RY R L + L T+ EVL
Sbjct: 18 LTGVLGGRTAAAFEKAFGTRTVADLLSHYPRRYARRGELTALANLPLDENVTIIAEVLRV 77
Query: 330 -NISFGGRR--MMTCQISDGSGILTMRF 256
S RR ++ +ISDG GILT+ F
Sbjct: 78 QERSMRARRGSILEVKISDGEGILTLTF 105
>UniRef50_Q1AW94 Cluster: ATP-dependent DNA helicase RecG; n=1;
Rubrobacter xylanophilus DSM 9941|Rep: ATP-dependent DNA
helicase RecG - Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129)
Length = 710
Score = 41.1 bits (92), Expect = 0.029
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV 340
L GVG + L ++ + +V DL+ H P R+ED +++ I EL G ATV V
Sbjct: 29 LPGVGPRIERALRELGISSVADLITHYPSRHEDLSNVRRISELRVGERATVLARV 83
>UniRef50_Q08WF2 Cluster: ATP-dependent DNA helicase RecG; n=3;
Bacteria|Rep: ATP-dependent DNA helicase RecG -
Stigmatella aurantiaca DW4/3-1
Length = 898
Score = 40.3 bits (90), Expect = 0.051
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -3
Query: 495 VGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFG 316
+G L L K L V D+L LP YEDR L I EL PG G V + G
Sbjct: 215 LGPRLLGALDKKGLRRVGDILFLLPRCYEDRRKLKTIAELEPGGRGVTVGLVKTADYVSG 274
Query: 315 --GRRMMTCQISDGSGILTMRF 256
G+R ++D SG + +
Sbjct: 275 RNGKRYFKAVVADRSGSIAATY 296
Score = 38.3 bits (85), Expect = 0.21
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 256 FNFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQ-ETLTPVYPTT 80
F+ +KN +R++ GE + G EM HPE DL + + + P+YP
Sbjct: 297 FHAGPWLKNRFTVGKRLVLSGEVRASLSGREMAHPEIEPAEDLESSSVHFNRIVPIYPGF 356
Query: 79 EGVKQATLRKLTDQ 38
E Q + R++ +
Sbjct: 357 ERGDQRSFREVASR 370
>UniRef50_Q88WK3 Cluster: ATP-dependent DNA helicase RecG; n=7;
Lactobacillales|Rep: ATP-dependent DNA helicase RecG -
Lactobacillus plantarum
Length = 679
Score = 39.9 bits (89), Expect = 0.068
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV 340
L+GVG A LA++ ++T+ DLL + P RYED + + E+ T++G V
Sbjct: 12 LSGVGPARQKGLAELGINTIADLLTYYPFRYED-LQVKDVNEIADQEKVTLKGTV 65
>UniRef50_Q6Y8C8 Cluster: Recombination and repair protein; n=8;
Alphaproteobacteria|Rep: Recombination and repair
protein - Rhizobium etli
Length = 701
Score = 39.5 bits (88), Expect = 0.089
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -2
Query: 169 AEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQAL 32
A M+HP+Y V+ + E + P+YP T G+ TLRK+ D AL
Sbjct: 137 ASMVHPDYIVKAE--EVESLPLVEPIYPLTAGLSPKTLRKIIDAAL 180
>UniRef50_Q9RT50 Cluster: DNA helicase RecG; n=5; Bacteria|Rep: DNA
helicase RecG - Deinococcus radiodurans
Length = 784
Score = 38.7 bits (86), Expect = 0.16
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = -3
Query: 501 TGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLN 334
TG G A KL+ + LHT++D+L P R+EDR L + ++ G TV G V++
Sbjct: 116 TGPGGA--RKLSTLGLHTLRDVLHAYPHRHEDRRALPDLADVEEGQKVTVMGTVVS 169
>UniRef50_Q8R9U4 Cluster: RecG-like helicase; n=9; Clostridia|Rep:
RecG-like helicase - Thermoanaerobacter tengcongensis
Length = 682
Score = 38.7 bits (86), Expect = 0.16
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = -3
Query: 519 LSHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV 340
L ++ GVG + K+ + V+DL+ + P YEDR+ + I +L+ G T + +
Sbjct: 5 LDIQYVKGVGPKRAKLFKKLGIDMVKDLIFYFPRDYEDRSEIVKIEDLIVGEKQTFKAYI 64
Query: 339 LNCNISFGGRRMMTCQI--SDGSGILTM 262
R++ +I DG+G + +
Sbjct: 65 AGSAREVKTSRVVITKIPVKDGTGAVEL 92
>UniRef50_Q55681 Cluster: ATP-dependent DNA helicase recG; n=9;
Cyanobacteria|Rep: ATP-dependent DNA helicase recG -
Synechocystis sp. (strain PCC 6803)
Length = 831
Score = 38.7 bits (86), Expect = 0.16
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -3
Query: 471 LAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNC 331
L + L TV+DLL + P Y D I EL G T+ G V+NC
Sbjct: 152 LKNLGLATVEDLLFYFPRDYLDYAQQVTIAELTAGETVTIVGRVVNC 198
Score = 34.7 bits (76), Expect = 2.5
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -2
Query: 208 VLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQE----TLTPVYPTTEGVKQATLRKL 47
V A G K K+G + +PE V D +P + + PVYP TEG+ LRKL
Sbjct: 253 VAASGLVKSSKFGLTLDNPEIEVL-DRHSPSIDSFKVGRVLPVYPLTEGITADFLRKL 309
>UniRef50_Q6MKR1 Cluster: ATP-dependent DNA helicase RecG; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent DNA
helicase RecG - Bdellovibrio bacteriovorus
Length = 701
Score = 38.3 bits (85), Expect = 0.21
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVL--- 337
FL GVG L + ++ L T+ DL P YED+ I L P +++ V+
Sbjct: 17 FLKGVGPKLGDLFSRKGLKTLGDLFEFYPRAYEDQRAARNISSLRPDDIVSIKATVVAVH 76
Query: 336 NCNISFGGRRMMTCQISDGSGILTMRF 256
+ N+ R+M + D SG + ++
Sbjct: 77 SVNMGRSARKMYDVLVRDASGQIHCKY 103
>UniRef50_Q8KE14 Cluster: TRNA methyltransferase SpoU; n=9;
Chlorobiaceae|Rep: TRNA methyltransferase SpoU -
Chlorobium tepidum
Length = 229
Score = 37.5 bits (83), Expect = 0.36
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -3
Query: 735 QACTCVKTACCRKAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQG 598
QA T ++ +RLLFE YP LA V + +G PYP +N+ G
Sbjct: 180 QAAGLYDTRHFSDSDIERLLFEYTYPRLAAVLRDQGKPYPKLNENG 225
>UniRef50_Q2J6Y3 Cluster: DEAD/DEAH box helicase-like; n=4;
Actinomycetales|Rep: DEAD/DEAH box helicase-like -
Frankia sp. (strain CcI3)
Length = 739
Score = 37.5 bits (83), Expect = 0.36
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = -3
Query: 495 VGAALSNKLAK-INLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNC-NIS 322
VGA + LA + L V DLL HLP RY +R L + +L+ G TV+ V
Sbjct: 20 VGARAAALLADGLELRLVGDLLGHLPRRYHERGELTDLADLVVGETVTVQARVEKTERRP 79
Query: 321 FGGRR--MMTCQISDGSGILTMRF 256
G R M+ ++DG L++ F
Sbjct: 80 MRGTRKSMVRVTVTDGRHSLSLTF 103
>UniRef50_A6F523 Cluster: DNA internalization-related competence
protein ComEC/Rec2; n=1; Marinobacter algicola
DG893|Rep: DNA internalization-related competence
protein ComEC/Rec2 - Marinobacter algicola DG893
Length = 793
Score = 37.5 bits (83), Expect = 0.36
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = -3
Query: 432 LHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSG 274
L + LR DR +Y G L GVY++VE ++ + G RR+ T IS G G
Sbjct: 540 LSVMLRERDRVLVYDTGPALEGVYSSVESVLIPNLTALGVRRIDTLVISHGDG 592
>UniRef50_Q0VRD7 Cluster: RNA methyltransferase, TrmH family, group
3; n=1; Alcanivorax borkumensis SK2|Rep: RNA
methyltransferase, TrmH family, group 3 - Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
Length = 230
Score = 37.1 bits (82), Expect = 0.48
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -3
Query: 696 AEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWATMQ 559
A LLF GY +A++ G+PYP ++++G+++ A A +Q
Sbjct: 179 ARYHELLFRWGYARIARLCDAHGVPYPELDEEGQVKDSAALTALLQ 224
>UniRef50_P96130 Cluster: ATP-dependent DNA helicase recG; n=2;
Treponema|Rep: ATP-dependent DNA helicase recG -
Treponema pallidum
Length = 686
Score = 37.1 bits (82), Expect = 0.48
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -3
Query: 510 SFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV-LN 334
S L G G + +L ++N+ T+ D+L + P +EDRT + V V +
Sbjct: 11 SVLKGTGKVVLAQLERLNISTIGDILSYWPRLWEDRTQEQMFSQWTLAHRLQVRVSVTAH 70
Query: 333 CNISFGGRRMMTCQISDGSG 274
C FG + + + DG G
Sbjct: 71 CWFGFGKSKTLKLVVQDGQG 90
>UniRef50_A6GU88 Cluster: ATP-dependent DNA helicase RecG; n=1;
Limnobacter sp. MED105|Rep: ATP-dependent DNA helicase
RecG - Limnobacter sp. MED105
Length = 703
Score = 36.7 bits (81), Expect = 0.63
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -3
Query: 438 LLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMR 259
L LHLPLR+ED+ + + L G + V+ + + R+ + + DG L +R
Sbjct: 38 LALHLPLRFEDKASITAMDSLQLGQKVNLLATVVGTEVQYHPRKQLRVWVEDGDTTLLLR 97
Query: 258 F 256
+
Sbjct: 98 W 98
>UniRef50_Q0IAN6 Cluster: ATP-dependent DNA helicase RecG; n=23;
Cyanobacteria|Rep: ATP-dependent DNA helicase RecG -
Synechococcus sp. (strain CC9311)
Length = 857
Score = 36.3 bits (80), Expect = 0.83
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -3
Query: 498 GVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV 340
G+G L+ +LA + L V+DL+ H P Y D + L I L G AT+ V
Sbjct: 167 GIGPKLAERLASLGLLVVRDLIQHYPRDYVDYSALRRIEALEAGETATIVATV 219
>UniRef50_A4E6T7 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 725
Score = 36.3 bits (80), Expect = 0.83
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = -3
Query: 471 LAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLP-GVYATVEGEVLNCNISFGGRRMMTC 295
L ++ + TV DLLLH+P RY D T + I E+ P G T+ V RM
Sbjct: 38 LRRLGIRTVGDLLLHIPHRYLDFTRSWSI-EMAPIGTVCTIIATVDRIVQKQPRPRMQVT 96
Query: 294 QIS--DGSGILTMRF 256
++S D +G+L + F
Sbjct: 97 EVSLVDETGVLQVAF 111
>UniRef50_Q7MXP4 Cluster: Ferrochelatase; n=1; Porphyromonas
gingivalis|Rep: Ferrochelatase - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 345
Score = 36.3 bits (80), Expect = 0.83
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 10/146 (6%)
Frame = -2
Query: 409 RSHPSLPHRRTTAGRLCHGGRR-SAELQYLLRRSAD--DDLPDQRRF----RHPHHALFN 251
RS P + H + A L H GR ++Y AD +LP R PH+A+ +
Sbjct: 83 RSFPLISHTKAIARALAHTGREVHVAMRYGKPAVADVLKELPHGRSLVVLPLFPHYAMSS 142
Query: 250 FSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEY-RVQGDLSTPELQETLTPVYPTTEG 74
+ A+++ A +RR+ H Y RV D P L + + + G
Sbjct: 143 YETAVEHCKAEIRRLCP--NLSFRVVQPFYAHEAYIRVLADNIRPYLTKPFDKLILSYHG 200
Query: 73 VKQATLRKLTDQALDLL--DTCAIEE 2
+ + L K T QAL+L + C EE
Sbjct: 201 IPRDHLDKTTRQALNLRHPEGCCTEE 226
>UniRef50_Q3JVA4 Cluster: Putative uncharacterized protein; n=1;
Burkholderia pseudomallei 1710b|Rep: Putative
uncharacterized protein - Burkholderia pseudomallei
(strain 1710b)
Length = 539
Score = 35.9 bits (79), Expect = 1.1
Identities = 41/132 (31%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Frame = -2
Query: 652 GESRKTQRPALSPRQSARRDR-S*CRLVGYYAGCRVSAMKGRLLD-AVPLVPNGRWRST* 479
G ++R + R RR R R V Y G R A + R+ + P P R S
Sbjct: 52 GWCETSRRGRIGARAPMRRRRLQPMRTVHAYPGMRALADRRRIGHRSTPRRPRARHGSGA 111
Query: 478 *QT--GENQPAYRAGSTLTPSPALRRSHPSLPHRRTTAGRLCHGGRRSAELQYLLRRSAD 305
T P +R + PSP+ P H R A GRR A L RRS +
Sbjct: 112 RPTRSARASPRHRFAARRRPSPSPAARGPD--HERPAAAP--QAGRRPARPAGLTRRSGE 167
Query: 304 DDLPDQRRFRHP 269
P+QRR R P
Sbjct: 168 RLRPEQRRDREP 179
>UniRef50_Q9UQ35 Cluster: Serine/arginine repetitive matrix protein
2; n=8; Eumetazoa|Rep: Serine/arginine repetitive matrix
protein 2 - Homo sapiens (Human)
Length = 2752
Score = 35.9 bits (79), Expect = 1.1
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = -2
Query: 751 RQRQNAGMYLRENSMLPESRATTPVV*RRLSGAGESRKTQRPALSPRQSARRDRS*CRLV 572
R+ ++A + R S R+ +P + G SR TQR S +SARR RS R
Sbjct: 514 RRSRSAQRWGRSRSPQRRGRSRSP----QRPGWSRSRNTQRRGRS--RSARRGRSHSRSP 567
Query: 571 GYY--AGCRVSAMKGRLLDAVPLVPNGRWRST**QTGENQPAYRAGSTLTPSPALRRSHP 398
+ R A +GR P R R+ + ++ R G + + +PA RRS
Sbjct: 568 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627
Query: 397 SLPHRRTTAGR 365
P RR + R
Sbjct: 628 RSPVRRRSRSR 638
>UniRef50_Q2S5W6 Cluster: ATP-dependent DNA helicase RecG; n=1;
Salinibacter ruber DSM 13855|Rep: ATP-dependent DNA
helicase RecG - Salinibacter ruber (strain DSM 13855)
Length = 700
Score = 35.5 bits (78), Expect = 1.5
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -3
Query: 507 FLTGVGAALSNKLAKIN-LHTVQDLLLHLPLRYEDRTHLYPIGELLPGV-YATVEGEVLN 334
++ GVG ++ A+ + + TV DLL P RY DRT + P+ +L G TV G V +
Sbjct: 12 YVKGVGEKRADVWAEQHGVRTVHDLLRFYPRRYLDRTTVTPVRQLQEGPDSVTVVGTVRS 71
Query: 333 CNISFGGRR 307
N+ G +
Sbjct: 72 VNVVPGNNQ 80
>UniRef50_A5KLE5 Cluster: Putative uncharacterized protein; n=5;
Clostridiales|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 687
Score = 35.5 bits (78), Expect = 1.5
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = -2
Query: 238 MKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQAT 59
++N+LA ++ G R K M HPE E ++T+ PVY T G+ +
Sbjct: 101 LRNTLAKGGTLVLRGRIVRKKNEIVMEHPEIFYPSS-KYEEKRDTMQPVYSLTAGLTNNS 159
Query: 58 LRKLTDQALDLLD 20
+ K QAL LD
Sbjct: 160 VIKAVKQALSFLD 172
Score = 35.1 bits (77), Expect = 1.9
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -3
Query: 510 SFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVL-N 334
S L G+G KI + TV+DL+ + P +E +GE+ G TV G V
Sbjct: 9 SSLKGIGEKTEKLFQKIGVDTVEDLIRYYPKGFEIFEDPISVGEVEEGKVCTVAGMVFGR 68
Query: 333 CNISFGGR-RMMTCQISDGSGIL 268
+S + ++ T + D +G L
Sbjct: 69 IQVSTNSKMQITTLHLKDVTGTL 91
>UniRef50_Q8EZB0 Cluster: ATP-dependent DNA helicase recG; n=4;
Leptospira|Rep: ATP-dependent DNA helicase recG -
Leptospira interrogans
Length = 724
Score = 35.1 bits (77), Expect = 1.9
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = -3
Query: 522 MLSHSFLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGE 343
+L + + GVG + + LA I + T+QDLL P RY DR +L L G T+ E
Sbjct: 16 LLPVTVIKGVGPSKAAALASIGIDTLQDLLNFFPRRYLDR-NLTDNVLLKTGETVTLIVE 74
Query: 342 VLNCNISFG 316
V++ ++ G
Sbjct: 75 VIDAYLAHG 83
>UniRef50_Q38ZH7 Cluster: Putative penicillin-binding protein; n=1;
Lactobacillus sakei subsp. sakei 23K|Rep: Putative
penicillin-binding protein - Lactobacillus sakei subsp.
sakei (strain 23K)
Length = 383
Score = 35.1 bits (77), Expect = 1.9
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 202 AYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRK 50
AY K G YGAE+ P Y +L T L T + +Y E + Q + K
Sbjct: 258 AYAYQKNGAYGAEIEDPAYIYTRELGTGNLYATASSLYQVEEAIVQGKVFK 308
>UniRef50_A0YFN1 Cluster: TRNA (Guanosine-2'-O-)-methyltransferase;
n=2; Gammaproteobacteria|Rep: TRNA
(Guanosine-2'-O-)-methyltransferase - marine gamma
proteobacterium HTCC2143
Length = 239
Score = 34.7 bits (76), Expect = 2.5
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 735 QACTCVKTACCRKAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEADADWWA 568
Q C + E RL FE +P + +R G YP + GEI W+A
Sbjct: 166 QIAGCYDRQRLSQQEYNRLFFEWAHPKVCDYCRRYGFDYPILRDDGEIANATIWYA 221
>UniRef50_A2FS54 Cluster: Surface antigen BspA-like; n=1;
Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
- Trichomonas vaginalis G3
Length = 629
Score = 34.7 bits (76), Expect = 2.5
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +1
Query: 487 CANAR*ERVGQHLTGDLSWHLPCSLH-----SSPPVGISFDLALLIDVGIRQAFAFCDFR 651
C N E G+ +LS + C ++ SP VGI LA+LI +G+ AF +R
Sbjct: 556 CVNLNPEYKGKLFGIELSRYTKCGVNPKCGGKSPTVGILVALAILIIIGVIAAFFILRWR 615
Query: 652 QHRIAAFKQ 678
++R+ F +
Sbjct: 616 KNRMKGFSE 624
>UniRef50_Q4FLY8 Cluster: ATP-dependent DNA helicase recG; n=3;
Bacteria|Rep: ATP-dependent DNA helicase recG -
Pelagibacter ubique
Length = 683
Score = 34.3 bits (75), Expect = 3.4
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATV 352
L GVG L K ++ + DLL LP Y DRT + I +L GV T+
Sbjct: 17 LNGVGKKTMEILKKKKVNNIFDLLWRLPKSYTDRTLVSKICDLQIGVIQTI 67
>UniRef50_UPI0000DA2DC9 Cluster: PREDICTED: hypothetical protein;
n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 192
Score = 33.5 bits (73), Expect = 5.9
Identities = 32/91 (35%), Positives = 38/91 (41%)
Frame = +1
Query: 31 PAPGRLIYAAWPALRLPLLDKPA*AFPVILAC*DRPARGIPGGSSPHHIYRALLRHKPVH 210
P+PG A PAL P P + P + +RP RG P G SP A R KP
Sbjct: 71 PSPGSPP-APRPALPRPQRASPTPSPPDAASEPERPGRGGPNGGSP----PANRRRKPAR 125
Query: 211 GGPPPGYFSLPR*N*KAHGEDAGTVADLAGH 303
PPP PR + +A G T A H
Sbjct: 126 SPPPP-----PRRSPRAGGGTCLTAAPSPAH 151
>UniRef50_Q8XJM5 Cluster: ATP-dependent DNA helicase; n=12;
Clostridium|Rep: ATP-dependent DNA helicase -
Clostridium perfringens
Length = 690
Score = 33.5 bits (73), Expect = 5.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 498 GVGAALSNKLAKINLHTVQDLLLHLPLRYE 409
GVG L +L K+ + TV DLLL+ P YE
Sbjct: 25 GVGPKLKERLNKVGIFTVLDLLLYFPRDYE 54
>UniRef50_A5P4Z4 Cluster: Putative uncharacterized protein
precursor; n=1; Methylobacterium sp. 4-46|Rep: Putative
uncharacterized protein precursor - Methylobacterium sp.
4-46
Length = 246
Score = 33.5 bits (73), Expect = 5.9
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 205 LAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQA 35
+A+GEA+R G + Y G TP L E LT +P + + +A LTD A
Sbjct: 136 VAFGEARRLSTGGARLRFAYVTPG---TPRLPELLTDEWPAEDALPEAVRLALTDPA 189
>UniRef50_Q9UQ26 Cluster: Regulating synaptic membrane exocytosis
protein 2; n=25; Euteleostomi|Rep: Regulating synaptic
membrane exocytosis protein 2 - Homo sapiens (Human)
Length = 1411
Score = 33.5 bits (73), Expect = 5.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 463 NQPAYRAGSTLTPSPALRRSHPSLPHRRTTAGRLCHGGRRSAELQYL 323
+ P+ G + PSPAL RSHP +T+ GRR +L L
Sbjct: 1119 SMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVAGRRGRQLPQL 1165
>UniRef50_Q0SJ08 Cluster: Putative uncharacterized protein; n=1;
Rhodococcus sp. RHA1|Rep: Putative uncharacterized
protein - Rhodococcus sp. (strain RHA1)
Length = 169
Score = 33.1 bits (72), Expect = 7.8
Identities = 34/121 (28%), Positives = 45/121 (37%)
Frame = -2
Query: 631 RPALSPRQSARRDRS*CRLVGYYAGCRVSAMKGRLLDAVPLVPNGRWRST**QTGENQPA 452
RPA P A DR ++ + R +G+ P RWR+ + +P
Sbjct: 25 RPADLPFPRATTDR--VQIADAISDAREDIGQGKPPRRTGADPVVRWRAR--RRLVARPG 80
Query: 451 YRAGSTLTPSPALRRSHPSLPHRRTTAGRLCHGGRRSAELQYLLRRSADDDLPDQRRFRH 272
T P S PH RT GR CHG R + E + L + P RR H
Sbjct: 81 EARPERRTLRPGRFGSPRGSPHSRTIPGRACHGSREAPETRKLDSPNQSSRGPGLRR-PH 139
Query: 271 P 269
P
Sbjct: 140 P 140
>UniRef50_A3RS25 Cluster: CzcD; n=3; Ralstonia solanacearum|Rep:
CzcD - Ralstonia solanacearum UW551
Length = 439
Score = 33.1 bits (72), Expect = 7.8
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 295 PDQRRFRHPHHALFNFSAAMKNSLA-AVRRVLAYGEAKRGKY-GAEMIHPEYRVQGDL 128
P HPHH N AA + +A A VLA G GKY G I P + G L
Sbjct: 279 PHDAHGHHPHHHDLNLRAAYLHVMADAATSVLALGALSTGKYLGLRWIDPMVGIVGAL 336
>UniRef50_Q4P8D8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 455
Score = 33.1 bits (72), Expect = 7.8
Identities = 39/108 (36%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Frame = -2
Query: 670 RRLSGAGESRKTQRPALSPRQSARRDRS*CRLVGY-YAGCRVSAMKGRLLD-AVPLVPNG 497
RRL+G SRKT + + SAR D + R G M G D AV P
Sbjct: 340 RRLAGGRLSRKTHDSDKADQVSARDDPTLKRKRGRPRLSSTTDEMAGGETDPAVDEQPKR 399
Query: 496 RWRST**QTGENQPAYRA---GSTLTPS--PALRRSHPSLPHRRTTAG 368
R R +T E QP R ST TP A R S P RTT G
Sbjct: 400 RGRPPKARTAEQQPKRRGRPPKSTYTPELMHASERRKSSFPSPRTTPG 447
>UniRef50_Q0CW06 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 225
Score = 33.1 bits (72), Expect = 7.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 645 VAKRKGLPYPHVNQQGEIEADADWW 571
VA KG PYPH N+ GE D WW
Sbjct: 186 VAVPKGRPYPHTNRAGEF-VDRIWW 209
>UniRef50_O34942 Cluster: ATP-dependent DNA helicase recG; n=57;
Bacilli|Rep: ATP-dependent DNA helicase recG - Bacillus
subtilis
Length = 682
Score = 33.1 bits (72), Expect = 7.8
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -3
Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEV 340
+ G+G L ++ ++ + DLL + P RY+D L + E+ TVEG+V
Sbjct: 12 IKGIGPETEKTLNELGIYDISDLLNYFPYRYDD-YELRDLEEVKHDERVTVEGKV 65
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 870,606,106
Number of Sequences: 1657284
Number of extensions: 20622210
Number of successful extensions: 59957
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 56455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59911
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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