Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0769.Seq
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   0.66 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    25   0.88 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   1.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            24   1.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.5  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   4.7  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
 Frame = +1

Query: 526 TGD-LSWHLPCSLH--SSPPVG 582
           TG+ LSW+ PCS++  SS PVG
Sbjct: 173 TGNSLSWNNPCSINSTSSQPVG 194


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 461 STCIPCRIYSYTFPCATKIAPISTPSENYCRAFMPRW 351
           S C   R +      A  ++P S PS +    F+P+W
Sbjct: 178 SECFDRRKFISALVNAPSVSPASLPSISPSGGFLPKW 214


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -1

Query: 209 CTGLWRSKA---R*IWCGDDPPGIPRAGRSQHARITGNAH 99
           C  LW+ K+     +   D  PGIP   + + +R T  AH
Sbjct: 191 CAVLWKDKSTDNEGVSDCDSEPGIPLKRKQRRSRTTFTAH 230



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -2

Query: 640 KTQRPALSPRQS-ARRDR-S*CRLVGYYAGCRVSAMKGRLLDAVPLVPN-GRWRST**QT 470
           +TQ P +  R+  A+R + +  R+  +++  R    K     A PLV +    R      
Sbjct: 241 RTQYPDIYTREELAQRTKLTEARIQVWFSNRRARLRKQITSAATPLVRSYAPERYPPLAQ 300

Query: 469 GENQPAYRAGSTLTPSPALRRSHPS 395
           G N  A+ + +T TP+  +   +PS
Sbjct: 301 GVNDDAFNSVATPTPTSVMTELYPS 325


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 520 HLTGDLSWHLPCSLHSSPPVGISFDL 597
           HL+GD++     S  ++PP G   D+
Sbjct: 76  HLSGDMTHGASISPQNTPPAGYPMDV 101


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 520 HLTGDLSWHLPCSLHSSPPVGISFDL 597
           HL+GD++     S  ++PP G   D+
Sbjct: 76  HLSGDMTHGASISPQNTPPAGYPMDV 101


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 425 FPCATKIAPISTPSENYCR 369
           F C T +AP+    + YC+
Sbjct: 76  FSCYTVLAPVLCKRQQYCQ 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,858
Number of Sequences: 336
Number of extensions: 4580
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)