Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0769.Seq
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    27   3.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   5.1  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    26   5.1  
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    26   6.8  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   6.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   6.8  

>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 738 MQACTCVKTACCRKAEQQRLLFE--GGYPVLAKVAKRKGL 625
           M  CTC+KTA   +A+Q     E  G + V A + K KG+
Sbjct: 120 MGFCTCMKTAEVTRAKQAATGQEVKGTFRVFADLYKEKGI 159


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 514 PLVPNGRWRST**QTGENQPAYRAGSTLTPSPALRRSHPSLP 389
           P  PN  +      TG+N+P +  G+T  P+     +  S P
Sbjct: 312 PTAPNSAFTKPATSTGDNKPTFSFGNTSKPTENTSTTATSAP 353


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 118 ELQETLTPVYPTTEGVKQA 62
           +LQET+T  YP  +G KQA
Sbjct: 300 KLQETMTRDYPVNQGWKQA 318


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 628 PALSPRQSARRDRS*CRLVGYYAGC-RVSAMKGRLLDA 518
           PAL PR+ AR   +  ++   Y GC   +A+K R++ A
Sbjct: 55  PALRPREFARLSHNQKKVQRAYGGCLSANAVKDRIVRA 92


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -2

Query: 181 GKYGAEMIHPEYRVQGDLSTPELQETL----TPVYPTTEGVKQATLRKLTDQALD 29
           G Y   + H  + V  ++  PEL E L    TP+ P  E   Q  + KLT   ++
Sbjct: 54  GAYVNSLFHNNHSVILNIKHPELGEPLKPYQTPLPPELEAPLQLLISKLTQHYIN 108


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 446 TVCRLIFASLLLSAAPTPVRNEWDS 520
           TV R  F +L +S A +PV N W+S
Sbjct: 773 TVSRNPFHNLKISGASSPVSNFWES 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,465
Number of Sequences: 5004
Number of extensions: 72328
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)