Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0769.Seq
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 33 0.33
04_01_0488 - 6419731-6420843 31 0.76
04_01_0484 - 6352556-6352881,6352927-6353692 31 1.3
10_01_0294 + 3052598-3052759,3052817-3053311 30 1.8
04_01_0477 - 6221990-6223224,6227722-6228817 30 2.3
12_02_0226 + 15887835-15891188 29 5.4
03_05_0628 - 26245714-26245755,26245854-26245938,26246022-262461... 29 5.4
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 28 7.1
09_01_0051 - 862286-864670 28 7.1
01_06_0418 + 29210310-29210612,29211154-29211541,29211946-292121... 28 7.1
09_06_0236 - 21781508-21783043,21783307-21783504 28 9.4
09_04_0610 + 18944084-18944244,18944471-18944564,18944809-189449... 28 9.4
05_05_0196 + 23152389-23152658,23153042-23153092,23153167-231532... 28 9.4
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 28 9.4
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600... 28 9.4
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -1
Query: 161 DPPGIPRAGRSQHARITGNAHAGLSNNGRRKAGHAA*INRPGAGSA 24
D G+P G S TG AHAG ++ G KA + PG+G A
Sbjct: 150 DGGGLPSGGLSAVMLTTGGAHAGGASGGELKAAFHMPVVVPGSGLA 195
>04_01_0488 - 6419731-6420843
Length = 370
Score = 31.5 bits (68), Expect = 0.76
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 242 RAEIEKRMVRMPEPSLIWQVIIRRPPKEILQ 334
R+ + R +PE ++W++++R PPK +L+
Sbjct: 4 RSALPPRRRGLPEELVVWEILVRLPPKPLLR 34
>04_01_0484 - 6352556-6352881,6352927-6353692
Length = 363
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 242 RAEIEKRMVRMPEPSLIWQVIIRRPPKEILQ 334
R + R +PE ++W++++R PPK +L+
Sbjct: 6 RTGLPPRRRGLPEEIVVWEILVRLPPKPLLR 36
>10_01_0294 + 3052598-3052759,3052817-3053311
Length = 218
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -2
Query: 268 HHALFNFSAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVY 89
HHAL N S + NSL+ + + +A G + P Y +QG + P + +T V
Sbjct: 152 HHALINQSGVLVNSLSNMMKSIADGSIAEHQAAG----PVY-LQGGV-FPNYRSLITDVQ 205
Query: 88 PTTEGV 71
P+T+ V
Sbjct: 206 PSTQAV 211
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 29.9 bits (64), Expect = 2.3
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +2
Query: 272 MPEPSLIWQVIIRRPPKEILQ 334
+PE ++W++++R PPK +L+
Sbjct: 18 LPEELVVWEILVRLPPKPLLR 38
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 266 VRMPEPSLIWQVIIRRPPKEILQ 334
V +PE ++W +++R PPK +L+
Sbjct: 407 VALPEVLVVWDILVRLPPKPLLR 429
>12_02_0226 + 15887835-15891188
Length = 1117
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -1
Query: 299 PARSATVPASSPCAFQFQRGNEK*PGGGP-PCTGLWRSKAR*IWCGDDPPGIPRAGRSQH 123
P+RS T +SS + +R + GGGP PC S DDP PR +
Sbjct: 37 PSRSKTTSSSSSSSKPPRRPPPRKDGGGPRPCLFQELSGLVAPSASDDPAFQPRRDGQER 96
Query: 122 ARITGNAHAGLSNNGRR 72
+ G+ A + RR
Sbjct: 97 CGLLGHDTAQCAEGARR 113
>03_05_0628 -
26245714-26245755,26245854-26245938,26246022-26246197,
26246325-26246432,26246713-26246788,26246878-26246939,
26247228-26247323,26247735-26247861,26247969-26248036
Length = 279
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 763 YEAQRQRQNAGMYLRENSMLPESRATTPV 677
+++ R+N G L ENS LPE R T V
Sbjct: 105 FDSLTVRENVGFLLYENSSLPEERIATLV 133
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 696 AEQQRLLFEGGYPVLAKVAKRKGLPYPHV 610
A +Q L+F +PV K K K LP P+V
Sbjct: 319 ANRQLLMFSATFPVTVKDFKEKYLPRPYV 347
>09_01_0051 - 862286-864670
Length = 794
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 683 ACC-LKAAIRCWRKSQNAKACLIPTSISKARSKLMPTGGLLCRLQGKCHERSPVRCCPTR 507
ACC L CW ++ NA ++ ++SK+ P G L R C+ R + R
Sbjct: 712 ACCALLINYLCWDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWR 771
>01_06_0418 +
29210310-29210612,29211154-29211541,29211946-29212143,
29212626-29213092,29213210-29213749,29214275-29214477,
29214567-29214624
Length = 718
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -2
Query: 445 AGSTLTPSPA--LRRSHPSLPH--RRTTAGRLCHGGRRSAELQYLLRRSADDDLPDQRR 281
A ++ P PA L S PS P RR AGR C GG A L+ + +A ++ RR
Sbjct: 2 APPSVAPCPARVLLVSTPSPPSLSRRRPAGRRCGGGDGGARLRTIRCGAATEEEDGDRR 60
>09_06_0236 - 21781508-21783043,21783307-21783504
Length = 577
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 491 PTPVRNEWDSI*QATFHGT--YPAACIVAHQSASASISPC*LTWG*G 625
P PV +EWD++ GT P + +H+ A + L WG G
Sbjct: 183 PRPVEDEWDAVALNYTSGTTSAPKGVVYSHRGAYLNTMGLLLQWGVG 229
>09_04_0610 +
18944084-18944244,18944471-18944564,18944809-18944928,
18945012-18945060,18945985-18946084,18946196-18946257,
18946365-18946426,18947080-18947187
Length = 251
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 648 SPAPDSRLQTTGVVALLSGNMLFSRRYMPA 737
SP+PD +L G V + + N+ + +Y+PA
Sbjct: 43 SPSPDPKLVKEGQVVIRARNLRINSQYIPA 72
>05_05_0196 +
23152389-23152658,23153042-23153092,23153167-23153240,
23153356-23153443,23153541-23153738,23153824-23153895,
23154034-23154093,23154194-23154370,23154975-23155064
Length = 359
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 495 VGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYP-IGELL 373
V AL N L + L + L+H P R +D H P GE+L
Sbjct: 141 VRPALKNTLKDLQLDYIDLYLIHWPFRLKDGAHQPPEAGEVL 182
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 27.9 bits (59), Expect = 9.4
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Frame = -2
Query: 658 GAGESRKTQRPALSPRQ-SARRDRS*CRLVGYYAGCRVSAMKGRLLDAVPLVPNGRWRST 482
GA SR + R R+ S +RS G RVS GR D+VP +G R++
Sbjct: 190 GAAVSRPSPRRRTPERKRSGSHERS-----GGSGSRRVSRSPGRRADSVPATASGE-RAS 243
Query: 481 **QTGE--NQPAYRAGSTLTPSPALR-RSHPSLPHRRTTAGRLCHGGRRSAELQ 329
Q G+ + PA G +P PA + +PS R + R G +A Q
Sbjct: 244 RQQPGKMVSVPAREKGRAPSPVPAASGKRYPS--PRSNSPARAGAAGNENAAAQ 295
>01_01_0774 -
6004040-6004371,6004634-6005215,6005391-6005657,
6005845-6006163
Length = 499
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 522 MLSHSFLTGVGAALSNKLAKINLHTVQDLL 433
+L HSF+ G GA ++ NLHT+++ +
Sbjct: 322 LLVHSFVAGKGADMAVSKHPFNLHTMEEAI 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,150,553
Number of Sequences: 37544
Number of extensions: 645053
Number of successful extensions: 1978
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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