Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0769.Seq
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)                29   3.1  
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)                 29   4.1  
SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               29   5.4  
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   9.5  

>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
          Length = 1303

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 502 NGRWRST**QTGENQPAYRAGSTLTPSPALRRSHPSLPHRRTTAGRLCHG 353
           NG   S   QT  N P + + S  T +   R SHPS P+   T     +G
Sbjct: 158 NGTIPSKPNQTANNTPTWSSESLRTRTILRRESHPSYPNTAVTKNESMNG 207


>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
          Length = 390

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -2

Query: 754 QRQRQNAGMYLRENS----MLPESRATTPVV*RRLSGAGESRKTQRPALSPRQSARRDRS 587
           +RQ   +G+  + N+    ++P  RA  PV   R      + K +RPA +PR +  + R 
Sbjct: 1   ERQADGSGVRGQNNATTTGVVPTPRARRPVPTPRARRPNPTTKARRPAPTPRTNIAQTRR 60

Query: 586 *CRLVGYYAGCRVSAMKGR 530
              L GY     +    GR
Sbjct: 61  --ALSGYTMSFEIGIKNGR 77


>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 219 RSAVYWLMAKQSAVNMVRR*STRNTACRAISARQNYRKRSRR 94
           RS  YW +  ++  N +   S R+T  + ++   NY + SR+
Sbjct: 96  RSLYYWKLRSKTETNFISHDSLRSTLQKFVTFLLNYERYSRK 137


>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 430 TPSPALRRSHPSLPHRRTTAGRLCHGGRRSAELQYLLRRSADDDLP 293
           TP    RR H S P   T   R+C    RSA +  LL   ++D  P
Sbjct: 94  TPQFHFRRLHKSTPSSSTAPARVCLDLLRSASIALLLVCLSNDVQP 139


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 73   VKQATLRKLTDQALDLLDTCAIEE 2
            ++Q +LR+LTD   DLLD+   EE
Sbjct: 3323 IRQTSLRELTDSREDLLDSARQEE 3346


>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1431

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -3

Query: 378 LLPGVYATVEGEVLNCNISFGGRRMM----TCQISDGSGILTMRFSISAR 241
           L+P  Y  V+ E++  N ++GG  +M      Q  D  GI+ ++ SI AR
Sbjct: 556 LVPNQYYIVDSEIIENNATWGGGLVMFGSTYLQNGDKDGIVLIKGSILAR 605


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,208,497
Number of Sequences: 59808
Number of extensions: 639786
Number of successful extensions: 1711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)