Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0769.Seq
(764 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 36 0.16
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 36 0.16
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 36 0.16
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 36 0.16
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 36 0.16
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 36 0.16
BC043144-1|AAH43144.1| 1163|Homo sapiens regulating synaptic mem... 33 0.85
AB018294-1|BAA34471.2| 1200|Homo sapiens KIAA0751 protein protein. 33 0.85
BC066647-1|AAH66647.1| 1457|Homo sapiens KIAA0586 protein protein. 30 7.9
AY359881-1|AAQ63404.1| 1504|Homo sapiens KIAA0586 isoform protein. 30 7.9
AB011158-1|BAA25512.2| 1576|Homo sapiens KIAA0586 protein protein. 30 7.9
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 35.9 bits (79), Expect = 0.16
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = -2
Query: 751 RQRQNAGMYLRENSMLPESRATTPVV*RRLSGAGESRKTQRPALSPRQSARRDRS*CRLV 572
R+ ++A + R S R+ +P + G SR TQR S +SARR RS R
Sbjct: 514 RRSRSAQRWGRSRSPQRRGRSRSP----QRPGWSRSRNTQRRGRS--RSARRGRSHSRSP 567
Query: 571 GYY--AGCRVSAMKGRLLDAVPLVPNGRWRST**QTGENQPAYRAGSTLTPSPALRRSHP 398
+ R A +GR P R R+ + ++ R G + + +PA RRS
Sbjct: 568 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627
Query: 397 SLPHRRTTAGR 365
P RR + R
Sbjct: 628 RSPVRRRSRSR 638
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 35.9 bits (79), Expect = 0.16
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = -2
Query: 751 RQRQNAGMYLRENSMLPESRATTPVV*RRLSGAGESRKTQRPALSPRQSARRDRS*CRLV 572
R+ ++A + R S R+ +P + G SR TQR S +SARR RS R
Sbjct: 514 RRSRSAQRWGRSRSPQRRGRSRSP----QRPGWSRSRNTQRRGRS--RSARRGRSHSRSP 567
Query: 571 GYY--AGCRVSAMKGRLLDAVPLVPNGRWRST**QTGENQPAYRAGSTLTPSPALRRSHP 398
+ R A +GR P R R+ + ++ R G + + +PA RRS
Sbjct: 568 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627
Query: 397 SLPHRRTTAGR 365
P RR + R
Sbjct: 628 RSPVRRRSRSR 638
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 35.9 bits (79), Expect = 0.16
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = -2
Query: 751 RQRQNAGMYLRENSMLPESRATTPVV*RRLSGAGESRKTQRPALSPRQSARRDRS*CRLV 572
R+ ++A + R S R+ +P + G SR TQR S +SARR RS R
Sbjct: 514 RRSRSAQRWGRSRSPQRRGRSRSP----QRPGWSRSRNTQRRGRS--RSARRGRSHSRSP 567
Query: 571 GYY--AGCRVSAMKGRLLDAVPLVPNGRWRST**QTGENQPAYRAGSTLTPSPALRRSHP 398
+ R A +GR P R R+ + ++ R G + + +PA RRS
Sbjct: 568 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627
Query: 397 SLPHRRTTAGR 365
P RR + R
Sbjct: 628 RSPVRRRSRSR 638
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 35.9 bits (79), Expect = 0.16
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = -2
Query: 751 RQRQNAGMYLRENSMLPESRATTPVV*RRLSGAGESRKTQRPALSPRQSARRDRS*CRLV 572
R+ ++A + R S R+ +P + G SR TQR S +SARR RS R
Sbjct: 479 RRSRSAQRWGRSRSPQRRGRSRSP----QRPGWSRSRNTQRRGRS--RSARRGRSHSRSP 532
Query: 571 GYY--AGCRVSAMKGRLLDAVPLVPNGRWRST**QTGENQPAYRAGSTLTPSPALRRSHP 398
+ R A +GR P R R+ + ++ R G + + +PA RRS
Sbjct: 533 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 592
Query: 397 SLPHRRTTAGR 365
P RR + R
Sbjct: 593 RSPVRRRSRSR 603
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 35.9 bits (79), Expect = 0.16
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = -2
Query: 751 RQRQNAGMYLRENSMLPESRATTPVV*RRLSGAGESRKTQRPALSPRQSARRDRS*CRLV 572
R+ ++A + R S R+ +P + G SR TQR S +SARR RS R
Sbjct: 304 RRSRSAQRWGRSRSPQRRGRSRSP----QRPGWSRSRNTQRRGRS--RSARRGRSHSRSP 357
Query: 571 GYY--AGCRVSAMKGRLLDAVPLVPNGRWRST**QTGENQPAYRAGSTLTPSPALRRSHP 398
+ R A +GR P R R+ + ++ R G + + +PA RRS
Sbjct: 358 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 417
Query: 397 SLPHRRTTAGR 365
P RR + R
Sbjct: 418 RSPVRRRSRSR 428
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 35.9 bits (79), Expect = 0.16
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = -2
Query: 751 RQRQNAGMYLRENSMLPESRATTPVV*RRLSGAGESRKTQRPALSPRQSARRDRS*CRLV 572
R+ ++A + R S R+ +P + G SR TQR S +SARR RS R
Sbjct: 562 RRSRSAQRWGRSRSPQRRGRSRSP----QRPGWSRSRNTQRRGRS--RSARRGRSHSRSP 615
Query: 571 GYY--AGCRVSAMKGRLLDAVPLVPNGRWRST**QTGENQPAYRAGSTLTPSPALRRSHP 398
+ R A +GR P R R+ + ++ R G + + +PA RRS
Sbjct: 616 ATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 675
Query: 397 SLPHRRTTAGR 365
P RR + R
Sbjct: 676 RSPVRRRSRSR 686
>BC043144-1|AAH43144.1| 1163|Homo sapiens regulating synaptic membrane
exocytosis 2 protein.
Length = 1163
Score = 33.5 bits (73), Expect = 0.85
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 463 NQPAYRAGSTLTPSPALRRSHPSLPHRRTTAGRLCHGGRRSAELQYL 323
+ P+ G + PSPAL RSHP +T+ GRR +L L
Sbjct: 871 SMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVAGRRGRQLPQL 917
>AB018294-1|BAA34471.2| 1200|Homo sapiens KIAA0751 protein protein.
Length = 1200
Score = 33.5 bits (73), Expect = 0.85
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 463 NQPAYRAGSTLTPSPALRRSHPSLPHRRTTAGRLCHGGRRSAELQYL 323
+ P+ G + PSPAL RSHP +T+ GRR +L L
Sbjct: 908 SMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVAGRRGRQLPQL 954
>BC066647-1|AAH66647.1| 1457|Homo sapiens KIAA0586 protein protein.
Length = 1457
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 763 YEAQRQRQNAGMYLRENSMLPESRATTPVV*RRLSGAG-ESRKTQ 632
Y+ R G YLR NS P+SR P V R+ G +S +TQ
Sbjct: 561 YQGHRSTLKKGPYLRFNSPSPKSRPQRPKVIERVKGTKVKSIRTQ 605
>AY359881-1|AAQ63404.1| 1504|Homo sapiens KIAA0586 isoform protein.
Length = 1504
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 763 YEAQRQRQNAGMYLRENSMLPESRATTPVV*RRLSGAG-ESRKTQ 632
Y+ R G YLR NS P+SR P V R+ G +S +TQ
Sbjct: 608 YQGHRSTLKKGPYLRFNSPSPKSRPQRPKVIERVKGTKVKSIRTQ 652
>AB011158-1|BAA25512.2| 1576|Homo sapiens KIAA0586 protein protein.
Length = 1576
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 763 YEAQRQRQNAGMYLRENSMLPESRATTPVV*RRLSGAG-ESRKTQ 632
Y+ R G YLR NS P+SR P V R+ G +S +TQ
Sbjct: 680 YQGHRSTLKKGPYLRFNSPSPKSRPQRPKVIERVKGTKVKSIRTQ 724
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,651,625
Number of Sequences: 237096
Number of extensions: 3206718
Number of successful extensions: 13714
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13704
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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