Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0769.Seq
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43360.1 68415.m05391 biotin synthase (BioB) (BIO2) identical...    30   1.9  
At2g21030.1 68415.m02493 expressed protein                             30   1.9  
At1g31880.1 68414.m03918 expressed protein                             30   1.9  
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative          29   4.5  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    29   4.5  
At3g25890.1 68416.m03226 AP2 domain-containing transcription fac...    28   5.9  
At3g03570.1 68416.m00360 expressed protein similar to hypothetic...    28   7.8  

>At2g43360.1 68415.m05391 biotin synthase (BioB) (BIO2) identical to
           SP|P54967 Pfam profile PF04055: radical SAM domain
           protein
          Length = 378

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 759 KPSVSGKMQACTCVKTACCRKAEQQRLLFEG 667
           +PSVSG +Q+ +C  +     AE +R + EG
Sbjct: 13  RPSVSGGLQSASCYSSLSAASAEAERTIREG 43


>At2g21030.1 68415.m02493 expressed protein
          Length = 156

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 151 PGGSSPHHIYRALLRHKP--VHGGPP 222
           P GS PHH Y     + P   HGGPP
Sbjct: 100 PPGSVPHHFYGGSSNYGPGSYHGGPP 125


>At1g31880.1 68414.m03918 expressed protein
          Length = 344

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 151 PGGSSPHHIYRALLRHKP--VHGGPP 222
           P GS PHH Y     + P   HGGPP
Sbjct: 239 PPGSVPHHFYGGSSNYGPGSYHGGPP 264


>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 
          Length = 953

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 504 LTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEGEVLN 334
           + G+    SN+L     HT++ LL H P  Y D  +     ++  G Y    G+VL+
Sbjct: 224 MPGLSKRHSNQLDSCGFHTMKKLLHHFPRTYADLQNAQV--DIEDGQYLIFVGKVLS 278


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 408 DRTHLYPIGELLPGVYAT-VEGEVLNCNISFGGRRMMTCQISD 283
           + TH Y +   LPG     +  EV N N++  GRR   CQ  D
Sbjct: 192 ESTHSYVVAIELPGASINDIRVEVDNTNLTVTGRRTSICQKVD 234


>At3g25890.1 68416.m03226 AP2 domain-containing transcription
           factor, putative 
          Length = 332

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 247 SAAMKNSLAAVRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPT 83
           S  +  S   V + +   + K GK+ AE+ HP  +V+  L T E  E     Y T
Sbjct: 118 SPVVGRSSTTVSKPVGVRQRKWGKWAAEIRHPITKVRTWLGTYETLEQAADAYAT 172


>At3g03570.1 68416.m00360 expressed protein similar to hypothetical
           protein GB:CAB38918 [Arabidopsis thaliana]
          Length = 607

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 265 GEDAGTVADLA-GHHPPTAEGDIAVQHFAFHRGINARQ*FSDGV 393
           GE A  +A L  GH+  T++     + + F+  I  R+ F DG+
Sbjct: 78  GEIASRIAQLYYGHYMRTSDAGYLSESYVFYEAILTREYFKDGL 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,338,455
Number of Sequences: 28952
Number of extensions: 427695
Number of successful extensions: 1143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)