Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0768.Seq
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   1.8  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   1.8  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   1.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.2  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 540 KGLGVSRLEPPSVQILVVVANTPARPW 620
           KG G  ++ PP+  ++V  +N   RPW
Sbjct: 51  KGFGGVQISPPNENLVVTSSN---RPW 74


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 540 KGLGVSRLEPPSVQILVVVANTPARPW 620
           KG G  ++ PP+  ++V  +N   RPW
Sbjct: 52  KGFGGVQISPPNENLVVTSSN---RPW 75


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 540 KGLGVSRLEPPSVQILVVVANTPARPW 620
           KG G  ++ PP+  ++V  +N   RPW
Sbjct: 52  KGFGGVQISPPNENLVVTSSN---RPW 75


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -1

Query: 445 QNASAPSIFRAG--CFGR*VVAHSLADSDFHGHRPAVMSDQRLS 320
           + A AP++  AG     R       A    H HRPA+   +R++
Sbjct: 274 ERAPAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQRRVA 317


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 206 EAGDLMTVPSGPILVSKLALW 268
           E G+L     GP+L S LA W
Sbjct: 411 ELGELAPGLVGPLLTSALASW 431


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 348 GRWPWKSESAKECATTHLPKQPAL 419
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102



 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 602 ICYYHQDLHRRRLQAAHAQTLLRSPSRTSYSY 507
           ICYYH  L    +  A  Q    + + T +S+
Sbjct: 120 ICYYHFTLELYTVLGAACQVCTPNATNTVWSH 151


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 348 GRWPWKSESAKECATTHLPKQPAL 419
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102



 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 602 ICYYHQDLHRRRLQAAHAQTLLRSPSRTSYSY 507
           ICYYH  L    +  A  Q    + + T +S+
Sbjct: 120 ICYYHFTLELYTVLGAACQVCTPNATNTVWSH 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,630
Number of Sequences: 336
Number of extensions: 3628
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)