Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0768.Seq
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    29   0.49 
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    28   1.1  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.6  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   2.6  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   6.0  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   8.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.0  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 648 TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDP 541
           ++NP  R +SR+       PP+SAP++  S    DP
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDP 226


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 654 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSAL 532
           LFTRN     +S+     L +P  +  ++  SGS  DP+ L
Sbjct: 4   LFTRNKEEEPTSKIDSSELQVPTEATASDILSGSEFDPAKL 44


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 75   SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 167
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 512 SRTCATESAEGSGREPLGASVGADLGGSSKYSSEALED 625
           S+     S++G+G EP   +     G + K SS+ LE+
Sbjct: 62  SQPLTPSSSKGAGNEPKSQNSSTTRGSAKKQSSKGLEE 99


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 630 RQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSVA 523
           RQSS    +YL   P S  TE   G+ P      VA
Sbjct: 17  RQSSEGHDDYLNRNPNSEATEGEEGTHPTTGTQPVA 52


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 588 PRSAPTEAPSGSRPDPS-ALSVAHVLLVRLNDTK 490
           P SAPT   +G+ P PS +LS + +   +LN ++
Sbjct: 458 PMSAPTSVLTGTSPQPSPSLSTSIMSTPKLNPSE 491


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 332 PTPFMVSHERFLGALTLRLVHPTAPVCLPKLAHLAPS 222
           P P + SH R        L+HP  P   P   HL+PS
Sbjct: 556 PDPLVASHARSSMQTIESLIHPRFP---PLQKHLSPS 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,185
Number of Sequences: 5004
Number of extensions: 62280
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)