Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0768.Seq
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980...    29   4.8  
09_01_0025 - 441528-444284                                             29   4.8  
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   6.3  
01_01_0094 - 730484-731570,732030-732715                               28   6.3  
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781...    28   8.3  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   8.3  
01_06_0956 - 33343503-33344086,33344225-33344384                       28   8.3  

>10_06_0028 -
           9802362-9802475,9802919-9803090,9803167-9803208,
           9803344-9804011,9804098-9804418,9804495-9804833,
           9804856-9805109,9805300-9805510
          Length = 706

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 594 LPPRSAPTEAPSGSRPDPSALSVAHVLLVRLNDTKLK 484
           + PR APT  P  S P P+ +S+   +  R  D +L+
Sbjct: 464 ITPRPAPTSRPPPSHPHPTVVSLPSAVEERDEDLQLQ 500


>09_01_0025 - 441528-444284
          Length = 918

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -2

Query: 594 LPPRSAPTEAPSGSRPDPSALSVA 523
           +P R +PT+ P+GS P PS+++++
Sbjct: 13  IPLRCSPTQPPAGSDPIPSSMNLS 36


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 251 LPKLAHLAPSSDLRLHRSSKPEFSPI 174
           L  L +LAP  DLR+  SSKP F  I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 380 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 285
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583


>12_02_1002 +
           25176434-25176501,25176613-25176859,25178106-25178171,
           25178754-25178822,25179007-25179080,25180850-25180991,
           25181546-25181596,25181769-25181774
          Length = 240

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 567 PPSVQILVVVANTPARPW 620
           PPS  +LV+V   P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 171 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 10
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


>01_06_0956 - 33343503-33344086,33344225-33344384
          Length = 247

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 639 PSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSVAH 520
           PSPR   R +   + LPP  AP  +P+   P P+A    H
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSPA---PAPAATQRRH 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,828,724
Number of Sequences: 37544
Number of extensions: 484923
Number of successful extensions: 1600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)