Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0768.Seq
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    24   6.1  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   9.9  

>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 645 RNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSA 535
           R   P++S +  L  + LPP++    +PS + P P A
Sbjct: 278 RETQPKKSVKEELPQIPLPPKTEAAASPSPAPPTPKA 314


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 645 RNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSA 535
           R   P++S +  L  + LPP++    +PS + P P A
Sbjct: 278 RETQPKKSVKEELPQIPLPPKTEAAASPSPAPPTPKA 314


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 23.8 bits (49), Expect(2) = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 582 SAPTEAPSGSRPDPSALSV 526
           SAP  AP  SR DP+ +++
Sbjct: 428 SAPATAPEASRRDPNDVTI 446



 Score = 22.6 bits (46), Expect(2) = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 648 TRNPSPRQSSRASLEYLLLPPRSAPTEAP 562
           TR P P +S+ A       PPR AP +AP
Sbjct: 368 TRAPIPARSAPA-------PPRGAPAKAP 389


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 348 GRWPWKSESAKECATTHLPKQPALKMDGAEAFCLYTTVTGTCDAKFLI 491
           G W  K  +  + A THLP+    K++  + F         C++ F I
Sbjct: 393 GTWSSKQPNCTKVACTHLPEVANAKIEVPDRFLFGDVARVVCNSGFTI 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,954
Number of Sequences: 27780
Number of extensions: 359456
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)