Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0768.Seq
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25545.1 68416.m03176 expressed protein                             30   1.3  
At3g60320.1 68416.m06742 expressed protein contains Pfam profile...    29   2.3  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   2.3  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   4.0  
At4g37430.1 68417.m05298 cytochrome P450 81F1 (CYP81F1) (CYP91A2...    28   6.9  
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat...    28   6.9  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   6.9  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   6.9  

>At3g25545.1 68416.m03176 expressed protein
          Length = 267

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -2

Query: 654 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSVAHVLLVRLNDTKLKI*H 475
           + T NP P +  +  L   + PP S P+     S P P       +L++ ++   L I  
Sbjct: 4   VLTENPPPSRFFQEDLNNFVQPPESLPSPFIIFSNPKPELPLRPSLLIIAISSPSLYI-F 62

Query: 474 HTCR*R*CIGKTLQRH-PFSG 415
           H+   +  +G  +    PFSG
Sbjct: 63  HSLPSKTLLGSLIMPEVPFSG 83


>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
           PF04782: protein of unknown function (DUF632), PF04783:
           protein of unknown function (DUF630)
          Length = 796

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 654 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSVA 523
           +F   P P  S ++  +++  PPR +P+ APS   P  ++ SVA
Sbjct: 70  VFLHTPPPPLSEQSPAKFV--PPRFSPSPAPSSVYPPSTSPSVA 111


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 237 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 142
           P  +V + PAS+FE + V T  +FE   RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -2

Query: 699 KISP*A*DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDP 541
           K SP   D   +  + F R+P P Q     + +   P  S PT  P  S P P
Sbjct: 413 KESPQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPPTSPPVHSTPSP 465


>At4g37430.1 68417.m05298 cytochrome P450 81F1 (CYP81F1) (CYP91A2)
           identical to cytochrome P450 81F1 (91A2) (SP:O65790)
           [Arabidopsis thaliana]
          Length = 500

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 332 PTPFMVSHERFLGALTLRLVHPTAPVCLPKLAHL---APSSDLRLHRSSKPEFSPI*SLR 162
           P  F+V   +FL + T R   P  P   P + HL    P     L R S  ++ PI SLR
Sbjct: 8   PLLFLVISYKFLYSKTQRFNLPPGPPSRPFVGHLHLMKPPIHRLLQRYSN-QYGPIFSLR 66

Query: 161 IG 156
            G
Sbjct: 67  FG 68


>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 520

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 339 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 446
           +T+  WP  SESAK+     L + P  ++   +  C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 295 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 396
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 295 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 396
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,716
Number of Sequences: 28952
Number of extensions: 352700
Number of successful extensions: 1061
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)