Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0766.Seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   0.47 
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    28   1.1  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   3.3  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 120 FSFLHCKLNNLIYFHKFVFYTIIKYNENYLSPRECCLKR 236
           F+++ C L+ + YF  F    +  YN NY+SP     +R
Sbjct: 64  FAYMECVLSWIAYFFGFDKAMLDPYNLNYVSPSTVVFQR 102


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 75  IQNNLSTNTYIITN*FSFLHCKLNNLIYFHKFVF---YTIIKYN 197
           +++ L+T  Y+  N FSFL+C      Y   F+    Y I+++N
Sbjct: 398 VEDCLATLGYLQNNVFSFLNCLFEEKKYMKHFISWLNYAIVEFN 441


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 547 FIYFFTFGKISIVTVHLTNLYN 612
           F+YF  F  ISI+ + +T +Y+
Sbjct: 821 FVYFSNFKNISIICIAMTKIYS 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,941
Number of Sequences: 5004
Number of extensions: 55405
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)