Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0766.Seq
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0462 + 9583558-9584910                                           30   2.0  
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285...    29   2.6  
11_06_0541 + 24771145-24775479                                         29   2.6  
01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427     29   2.6  
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     29   3.4  

>09_02_0462 + 9583558-9584910
          Length = 450

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 183 WYKKQIYGNKSSYLVYNAKN*INWL 109
           WY + + G K S +V NAK  + WL
Sbjct: 416 WYNESVAGGKESQVVKNAKPFVEWL 440


>12_01_0371 -
           2851186-2851491,2851582-2851765,2851967-2852156,
           2853375-2853613,2853862-2853947,2854720-2854827,
           2854929-2855031,2855152-2855213
          Length = 425

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 452 KADNFIYDLCNLCKSLVLQYS-MSKILASQRDALF 351
           + D FIY LC++    VL+ S +  ILAS R+ +F
Sbjct: 101 EVDEFIYQLCDVTGDEVLERSDLETILASIRETIF 135


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 511  YMNIQLKINQ*AFIYFFTFGKISIVTVHLTNLYNKRIFSLRANPSVNA*IFITYSY 678
            +  ++LK N+     F    KIS VT+H T L N  +  L   PS+   + ++ SY
Sbjct: 1261 FKELELKCNKPLLSSFENANKISKVTLHSTLLKNADLQILAKIPSICCLVLLSDSY 1316


>01_05_0575 + 23372759-23373676,23373798-23373941,23374065-23374427
          Length = 474

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 665 IKIHALTEGFALKEKILLLYRFVRCTVTIEIL 570
           IK+ AL   F ++E+I +L  F+RC   +E L
Sbjct: 320 IKVLALRVNFCVQEEIAMLVSFLRCFPNVETL 351


>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 511  YMNIQLKINQ*AFIYFFTFGKISIVTVHLTNLYNKRIFSLRANPSVNA*IFITYSY 678
            +  ++LK N+     F    KIS VT+H T L N  +  L   PS+   I +  SY
Sbjct: 1203 FKELELKCNKPLLSSFGNANKISKVTLHSTLLKNADLQILAKIPSICCLILLGNSY 1258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,707
Number of Sequences: 37544
Number of extensions: 260015
Number of successful extensions: 362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)