Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0762X.Seq
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   3.5  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   3.5  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   3.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.1  
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    25   8.0  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 314 GERWHNAGRLLNKQNVFDDFQAAAEYLVSERY 409
           GE W    R L+    F DF    +YLVS  Y
Sbjct: 221 GESWGMCARFLHPYVKFVDFSPNEKYLVSWSY 252


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 86  LRRVESFDCNFSEHFGV 36
           L RV   DC++S+HF +
Sbjct: 276 LERVPKLDCSYSDHFAI 292


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +1

Query: 40  PKCSEKLQSKDSTRRSTRPNRYSTPVKTAPKYPCSLYRKRICRA 171
           P+  ++ +S  ST     P    + VK     PC  +R   C A
Sbjct: 14  PRLLDQKKSAKSTLPKNTPENGVSTVKNLQHVPCKFFRNGTCTA 57


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 227  LHVDVEAAVAVQQGRDRAVARQILFRYNEHGYFGAVFTGVEYLF 96
            +H+D+   +A +QG+   V   + FR       G   TGVE +F
Sbjct: 2646 IHIDL--GIAFEQGKKLPVPECVPFRLTRDVVDGMGITGVEGVF 2687


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +2

Query: 269 NGIVAIPNIR-----GGGEYGERWHNAGRLLNKQNVFDDFQAAAEYLVSERYTR 415
           + I+  P IR     GGG       +AGR L  +   + F  A E L+ +R T+
Sbjct: 26  SNILTFPPIRTSTKHGGGSSKNTGDSAGRRLGIKRSENQFVRAGEILIRQRGTK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,823
Number of Sequences: 5004
Number of extensions: 28508
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)