Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0762X.Seq
(486 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38) 122 1e-28
SB_107| Best HMM Match : Transposase_28 (HMM E-Value=0.55) 45 3e-05
SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_41344| Best HMM Match : Peptidase_S9 (HMM E-Value=5.6e-12) 29 1.5
SB_32432| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 29 2.7
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 29 2.7
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 28 4.7
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2) 28 4.7
SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064) 28 4.7
SB_32119| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0) 28 4.7
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 27 6.2
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_19086| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3) 27 8.2
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 27 8.2
>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
Length = 253
Score = 122 bits (295), Expect = 1e-28
Identities = 56/75 (74%), Positives = 60/75 (80%)
Frame = +2
Query: 257 MQHMNGIVAIPNIRGGGEYGERWHNAGRLLNKQNVFDDFQAAAEYLVSERYTRPALLTIQ 436
MQ++ G+VAI NIRGGGEYGE WH AG L NKQNVFDDFQAAA YL+S YT P LTI
Sbjct: 72 MQNLGGVVAIANIRGGGEYGEDWHQAGMLGNKQNVFDDFQAAANYLISHEYTEPKRLTIC 131
Query: 437 GGSNGGLLVAACINQ 481
GGSNGGLLV AC NQ
Sbjct: 132 GGSNGGLLVCACANQ 146
Score = 103 bits (246), Expect = 1e-22
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +3
Query: 45 VFREVTVKGFDASQYEAKQIFYSSKDGTKVPMFIISKKDLPRDGSIPALLYGYGGFNINV 224
VFRE+ VK FDAS +E +Q+FY SKDGTK+PMF++ KK + D S PA LYGYGGFNI++
Sbjct: 1 VFREIKVKDFDASLFETEQVFYESKDGTKIPMFLVHKKGITLDSSHPAYLYGYGGFNISI 60
Query: 225 QPGFSVTRLV 254
P FSV+R++
Sbjct: 61 TPSFSVSRII 70
>SB_107| Best HMM Match : Transposase_28 (HMM E-Value=0.55)
Length = 320
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +3
Query: 72 FDASQYEAKQIFYSSKDGTKVPMFIISKKDLPRDGSIPALLYGYGGFNINVQPGFSVTRL 251
F + Y+ ++ S+DGT VP+ + ++L +G P L++ YG + +NV GF +L
Sbjct: 197 FPSDDYKCTRLEVPSQDGTLVPVTLFHHEELELNGHNPMLMHVYGAYGVNVDVGFRPEQL 256
Query: 252 VL 257
L
Sbjct: 257 CL 258
Score = 30.3 bits (65), Expect = 0.88
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 275 IVAIPNIRGGGEYGERWHNAGRLLNKQNVFD 367
++A ++RGGGE G W++ L +K F+
Sbjct: 264 VLAFCHVRGGGELGREWYHQAILHHKHRSFE 294
>SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 81 SQYEAKQIF-YSSKDGTKVPMFIISKKDLPRDGSIPALLYGYGG 209
S Y+A +IF Y SK G +V I ++ P +LY YGG
Sbjct: 34 SDYKAPEIFSYKSKQGYQVYGLIFKPHNVEPGVKYPTILYVYGG 77
>SB_41344| Best HMM Match : Peptidase_S9 (HMM E-Value=5.6e-12)
Length = 196
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 368 DFQAAAEYLVSERYTRPALLTIQGGSNGGLLVAACINQ 481
DF+A L Y+ P L +G S GGL+V A N+
Sbjct: 8 DFEACTAALQRMGYSSPPLTAARGVSAGGLVVGAVCNR 45
>SB_32432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 368 DFQAAAEYLVSERYTRPALLTIQGGSNGGLLVAACINQ 481
+ AAAE ++S P L + GGS+GG L A I Q
Sbjct: 443 EVMAAAENVLSRGAHDPHNLFVMGGSHGGFLSAHLIGQ 480
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +1
Query: 409 HAP-RPPHHPGGLQRRPARSRLHQPAP 486
H P RPPH PG L P R Q P
Sbjct: 404 HEPGRPPHEPGRLPHEPGRPPYEQRRP 430
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +1
Query: 409 HAP-RPPHHPGGLQRRPARSRLHQPAP 486
H P RPPH PG L P R Q P
Sbjct: 170 HEPGRPPHEPGRLPHEPGRPPYEQRRP 196
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 57 VTVKGFDASQYEAKQIFYSSKDGTKVPMFIISKKDLPRD 173
V +G DA++ +FYS+ G KV + + K PRD
Sbjct: 409 VAFEGIDATEVYPCVMFYSNTPGEKVTIKDMCMKSAPRD 447
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 22 KQKPYTPKCSEKLQSKDSTRRSTRPNRYSTPVKTAP 129
+ KP PK +KL D + + +P+R TP K P
Sbjct: 325 ESKPAGPKKPDKLILPDRSSPTGKPSRVPTPSKATP 360
>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
Length = 2527
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 161 ILFRYNEHGYFGAVFTGVEYLFGLV 87
+LF YN FGA+ TG E+L LV
Sbjct: 1900 LLFLYNNVQQFGAICTGHEFLESLV 1924
>SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)
Length = 756
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 55 KLQSKDSTRRSTRPNRYSTPVKTAPKYPCS-LYRKRICRA 171
KL+ + STRR TRP+R + + CS L+ C+A
Sbjct: 239 KLRKQSSTRRDTRPSRLREFGQWITTHDCSNLFGAHTCQA 278
>SB_32119| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0)
Length = 1194
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 174 GSIPALLYGYGGFNI 218
G + ALLYGYGGF I
Sbjct: 646 GFLQALLYGYGGFRI 660
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 79 RRSTRPNRYSTPVKTAPKYPCSLYRKR 159
R ST P STP + PK P S RKR
Sbjct: 544 RLSTVPPEASTPTDSFPKSPTSATRKR 570
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +1
Query: 13 VDFKQK--PYT--PKCSEKLQSKDST--RRSTRPNRYSTPVKTAPKYP 138
VDFK K P + P S K Q+ +T R ++ + +STPV +AP P
Sbjct: 978 VDFKSKEPPASRIPVLSSKPQASPTTDRRAASSSSNHSTPVNSAPPTP 1025
>SB_19086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 317 ERWHNAGRLLNKQNVFDDFQAAAEYLVSERYTRPA 421
E W G+L+ + +FD+F Y + Y + A
Sbjct: 372 EIWDLGGKLIRTERIFDEFHRVLRYRATMEYGKLA 406
>SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)
Length = 347
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 94 PNRYSTPVKTAPKYPCSLYRKRICRA 171
P Y P ++AP YP + +KR+ R+
Sbjct: 150 PYMYGGPYRSAPTYPVQVQQKRLDRS 175
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 25 QKPYTPKCSEKLQSKDSTRRSTRPNRYSTPVKT 123
+KP KLQ+KDS +S + +TPVK+
Sbjct: 1564 RKPVQHPQKSKLQTKDSCVKSEQTTSVTTPVKS 1596
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,654
Number of Sequences: 59808
Number of extensions: 238683
Number of successful extensions: 1055
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -