Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0761.Seq
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.4  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   7.5  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   7.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   9.9  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   9.9  
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    25   9.9  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   9.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.9  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKL 489
           A+   +A  EA  + E    R  H Q  AQ  +  +   A R    R Q+E      EKL
Sbjct: 787 AEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMA----EKL 842

Query: 488 NKDFLEKVWQERAEQ 444
            +    ++ QER E+
Sbjct: 843 ERQ--RRIQQERDEE 855


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -3

Query: 581 QNSSSVQVREACRHTILRRQKETVQGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFG 402
           + S  + +R +  H  L +  +  + ++E+     L+++ QER E+   RQK    + FG
Sbjct: 517 KRSKVLPLRPSVTHDNLSKSSDYSKNEVEREIMLGLDQIAQERREKMEARQK--FEQHFG 574

Query: 401 E 399
           E
Sbjct: 575 E 575


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 548 CRHTILRRQKETVQGDLEKLNKDFLEK--VWQERA 450
           CRH+ L    +T+Q  +E L K   EK  VW  RA
Sbjct: 206 CRHSKLGEPSKTIQEVIEAL-KPLFEKRPVWTRRA 239


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 634  KALKKGLDPEALTGKHPPKI---QVASKYERRVDTRSYDDKKKL 512
            KALKK    + +  K+PP      V+ K++R VD  +  +  KL
Sbjct: 1113 KALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKL 1156


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 431 QKARLPKWFGERP 393
           QK RLP+W G+ P
Sbjct: 84  QKDRLPRWIGDNP 96


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 494 SLGHPEQFLFVVVGSCVDTPLVLGRYLNFGRVLACERFGVETLLESFVPQLLLLSFFEL 670
           +LG PE F    + +CV  P     Y +F  +   +R+    L      +++ L F EL
Sbjct: 110 NLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKPDLTIDEAVRIMKLCFDEL 168


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 152 SYSFVTNPLTYCYYNMNKI 96
           SY+ V    +YCY+++NK+
Sbjct: 183 SYNVVNGWYSYCYHSLNKL 201


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 503 DLEKLNKDFLEKVWQERAEQFGGRQKAR 420
           DLEKL+ +F EKV +E  E +   +K R
Sbjct: 300 DLEKLHSNFAEKV-KEEQELYKSLEKKR 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,475
Number of Sequences: 5004
Number of extensions: 29632
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)