Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0761.Seq
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                36   0.039
SB_25279| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)                 32   0.49 
SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)         29   2.6  
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  29   2.6  
SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)                 29   2.6  
SB_17918| Best HMM Match : FtsK_SpoIIIE (HMM E-Value=1.3)              29   3.4  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  29   3.4  
SB_18442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)                 29   4.5  
SB_47758| Best HMM Match : TFIIA (HMM E-Value=2.7e-18)                 28   6.0  
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)                   28   7.9  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   7.9  
SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_44782| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKL 489
           A RKTK +      ++ ++PR A R+       +   + A      R+ K +   D +K 
Sbjct: 344 ASRKTKTSKLQDQDKQAAKPRQASRKTKTSKLQNQNKQAAIPRQASRKTKTSKPQDQDKQ 403

Query: 488 NKDFLEKVWQERAEQFGGRQKAR 420
            +D  ++  Q R  Q   + KAR
Sbjct: 404 EQDKQDQEKQARPRQASRKSKAR 426



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQA-PAQNS--SSVQVREACRHTILRRQK 519
           A RKTK +      ++ +RPR A RQA P Q+S  S  + R+A R +  +  K
Sbjct: 586 ASRKTKTSKPQDQDKQAARPRQAARQARPRQSSRKSKARARQASRKSKSKTSK 638



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQA-PAQNS--SSVQVREACRHT 537
           A  KTK +      ++ +RPR + RQA P Q+S  S  + R+A R T
Sbjct: 452 ASSKTKTSKPEDQDKQAARPRQSARQARPRQSSRKSKARPRQASRKT 498


>SB_25279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQA-PAQNS--SSVQVREACR 543
           A RKTK +      ++ +RPR A RQA P Q+S  S  + R+A R
Sbjct: 50  ASRKTKTSKPQDQDKQAARPRQAARQARPRQSSRKSKARARQASR 94


>SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)
          Length = 547

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 20/83 (24%), Positives = 42/83 (50%)
 Frame = -3

Query: 659 KTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKLNKD 480
           KTK +   +  ++ +RPR A R+   Q+  + + R+A R T   + ++     L+  +K 
Sbjct: 7   KTKKSKPQEKDKQAARPRQASRK--PQDKQAARPRQASRKTKTSKLQDQ-DSKLQDQDKQ 63

Query: 479 FLEKVWQERAEQFGGRQKARLPK 411
              +  +++++Q   RQ +R  K
Sbjct: 64  AARRARRKKSKQQDARQASRKTK 86



 Score = 31.1 bits (67), Expect = 0.85
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKL 489
           A RKTK +      ++ +RPR A R+       +   + A      R+ K + Q D  + 
Sbjct: 358 ASRKTKTSKPQDQDKQAARPRQAGRKTKTSKPQAQDKQAASPRQASRKTKTSKQQDARQA 417

Query: 488 NKDFLEKVWQERAEQFG-GRQKARLPK 411
           ++    +  Q++ +Q    RQ +R  K
Sbjct: 418 SRKTKTRKPQDQDKQAARPRQASRKTK 444


>SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)
          Length = 359

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 566 VQVREACRHTILRRQKETVQGDLEKLNKDFL-EKVWQERAEQFGGR 432
           + +R +  HTI  R+   +  +L+KLN+ +  +KV+QE  +  G +
Sbjct: 296 INIRLSSMHTIFAREHNRIATELKKLNRHWSPDKVFQEARKIVGAQ 341


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 668  AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSV 564
            A RKTK A+ A   Q+ +RPR +  Q  A   + V
Sbjct: 963  ASRKTKQASRASKQQDQARPRPSKPQDQASRKTKV 997


>SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)
          Length = 567

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHR-----QAPAQNSSSVQVREACRHTILRRQKETVQG 504
           A RKTK +      ++ +RPR A R     QA ++ +S  Q ++A R    R+ K +   
Sbjct: 112 ASRKTKTSKPQDQDKQAARPRQASRKPQDKQAASRKTSKPQDKQAARQP-SRKTKTSKPQ 170

Query: 503 DLEK 492
           D +K
Sbjct: 171 DQDK 174


>SB_17918| Best HMM Match : FtsK_SpoIIIE (HMM E-Value=1.3)
          Length = 271

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 633 KLSRRVSTPKRSQASTRPKFK*RPSTRGVSTHDPTTTKRNCSG*PRETEQGLPREGVARE 454
           ++S RV +PK ++  ++P  K R  +R  +T  P+     CS   R+ +Q L R  + R 
Sbjct: 14  EISSRVRSPKITRRLSQPCVKYRVCSRSQATGSPSIAALICSAEDRKRDQ-LMRYAIHRG 72

Query: 453 S 451
           S
Sbjct: 73  S 73


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKL 489
           A RKTK +      ++ +RPR A R+           + A      R+ K +   D +K 
Sbjct: 119 ANRKTKTSKPQDQDKQAARPRQASRKTKTSKPQDQDKQAARPRQASRKTKTSKPQDQDKQ 178

Query: 488 NK 483
           +K
Sbjct: 179 DK 180



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQ---APAQNSSSVQVREACRHTILRRQKETVQGDL 498
           A RKTK +      ++ +RPR A R+   +  Q+  + + ++A R T  +  K +   D 
Sbjct: 547 ASRKTKTSKPQDQEKQATRPRQASRKTKTSKPQDKQAARPKQASRKT--KTSKTSKPQDK 604

Query: 497 EKLNKDFLEKVWQERAEQFGGRQ-KARLPKWFGERP 393
           +           Q++ +Q   R+ K R P+    RP
Sbjct: 605 QDARPASRRTKPQDQDKQDASRKTKTRKPQDQAARP 640


>SB_18442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 627 SRRVSTPKRSQASTRPKFK*RPSTRGVST-HDPTTT 523
           S+ VS P+ SQA TRP  K +  TR V T HD  T+
Sbjct: 44  SQSVSQPRNSQAPTRPPTK-QVMTRHVMTRHDDVTS 78


>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
          Length = 566

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHT 537
           A RKTK +      ++ +RPR   R+   Q+  + ++R+A R T
Sbjct: 338 ASRKTKTSKPQDQDKQAARPRQESRK--PQDKQAARLRQASRKT 379


>SB_47758| Best HMM Match : TFIIA (HMM E-Value=2.7e-18)
          Length = 296

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKL 489
           A   T A    Q SQ+G+      R AP   + ++QV    +H  L  Q   +Q      
Sbjct: 150 ASAATLAIPGIQQSQQGATQAGTTRLAPYPTARTIQVAHPIQHQQLHPQIPHLQAQQLAA 209

Query: 488 NKDFLEKVWQ 459
           NK   + V Q
Sbjct: 210 NKQQPQMVIQ 219


>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 564 PSTRGVSTHDPTTTKRNCSG*PRETEQ 484
           P TR  +   P +T RNC   PRE+ +
Sbjct: 162 PKTRNDTEESPKSTPRNCGNGPRESRR 188


>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
          Length = 355

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/86 (23%), Positives = 34/86 (39%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKL 489
           A  KTK + +    ++ +RPR A R+     + + + +E  +     RQ        +  
Sbjct: 242 ASLKTKTSKQQDQGKQAARPRQASRKTKTSKTKTSKPQEKDKQAARPRQASRKTKTSKPQ 301

Query: 488 NKDFLEKVWQERAEQFGGRQKARLPK 411
            KD       ER  Q   + K R P+
Sbjct: 302 EKD----NQAERPRQASRKTKTRKPR 323



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPA-----QNSSSVQVREACRHTILRRQKE 516
           A RKTK +   +   +  RPR A R+        Q+  + + R+A R T + + ++
Sbjct: 291 ASRKTKTSKPQEKDNQAERPRQASRKTKTRKPRDQDKKAARPRQASRKTKISKPQD 346


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -2

Query: 666  SKKDKSSN*GT-KLSRRVSTPKRSQASTRPKFK*RPSTRGVSTHDPTTTKRNCSG*PRET 490
            SK   SSN    KL  ++STPK + + +  K       R V    P  T+ N S  P ++
Sbjct: 782  SKNTNSSNGNKEKLLSQISTPKETLSDSTDKRPVLELPRPVDNRKPAETQDN-SEVPNKS 840

Query: 489  EQGLPREGVARESRTVRRQ 433
               LP+  VA E  T   +
Sbjct: 841  VSRLPKV-VASEPNTANEE 858


>SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHT 537
           A  KTK +      ++ +RPR A R+   Q+  + + R+A   T
Sbjct: 23  ASPKTKTSKPQDQDKQAARPRQASRKPQDQDKQAARPRQASLKT 66


>SB_44782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 668 AQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQ 522
           A RKTK +      ++ +RPR A R+A        Q ++A R    + Q
Sbjct: 114 ASRKTKTSKPQGQDKQAARPRQASRKAKPSKPQG-QAKQAARRKTSKPQ 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,123,315
Number of Sequences: 59808
Number of extensions: 233200
Number of successful extensions: 937
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)