Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0761.Seq
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 72 4e-13
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 72 4e-13
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 72 4e-13
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 72 4e-13
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 60 1e-09
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 51 6e-07
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 51 6e-07
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 32 0.32
U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical pr... 31 0.74
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 30 1.3
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 30 1.3
Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF016688-7|AAB66080.1| 726|Caenorhabditis elegans Hypothetical ... 28 6.9
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 27 9.1
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 71.7 bits (168), Expect = 4e-13
Identities = 34/55 (61%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Frame = -1
Query: 670 ELKERQKQQLRHKALKKGLDPE-ALTGKHPPKIQVASKYERRVDTRSYDDKKKLF 509
EL ERQ+Q R+KALKKGLDPE A + HPPKI ASK++R+ D RSY D++ LF
Sbjct: 266 ELHERQRQAARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLF 320
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 71.7 bits (168), Expect = 4e-13
Identities = 34/55 (61%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Frame = -1
Query: 670 ELKERQKQQLRHKALKKGLDPE-ALTGKHPPKIQVASKYERRVDTRSYDDKKKLF 509
EL ERQ+Q R+KALKKGLDPE A + HPPKI ASK++R+ D RSY D++ LF
Sbjct: 266 ELHERQRQAARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLF 320
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 71.7 bits (168), Expect = 4e-13
Identities = 34/55 (61%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Frame = -1
Query: 670 ELKERQKQQLRHKALKKGLDPE-ALTGKHPPKIQVASKYERRVDTRSYDDKKKLF 509
EL ERQ+Q R+KALKKGLDPE A + HPPKI ASK++R+ D RSY D++ LF
Sbjct: 171 ELNERQRQVARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLF 225
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 71.7 bits (168), Expect = 4e-13
Identities = 34/55 (61%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Frame = -1
Query: 670 ELKERQKQQLRHKALKKGLDPE-ALTGKHPPKIQVASKYERRVDTRSYDDKKKLF 509
EL ERQ+Q R+KALKKGLDPE A + HPPKI ASK++R+ D RSY D++ LF
Sbjct: 275 ELNERQRQVARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLF 329
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/55 (47%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = -1
Query: 670 ELKERQKQQLRHKALKKGLDP-EALTGKHPPKIQVASKYERRVDTRSYDDKKKLF 509
EL ERQ+Q R+ ALKKG+DP E ++P K+Q+ SKY+R+VD R++ +++ +F
Sbjct: 1086 ELNERQRQVTRNSALKKGIDPAEVGNTRYPAKVQIVSKYDRQVDRRNFRERRSVF 1140
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -1
Query: 670 ELKERQKQQLRHKALKKG-LDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKLF 509
EL ER +Q R K G + + G+HPPK+Q++SKY+R++D R++ ++++++
Sbjct: 250 ELNERSRQVARANNAKNGQVSGDDTGGRHPPKVQISSKYDRQIDRRNFKERRQVY 304
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -1
Query: 670 ELKERQKQQLRHKALKKG-LDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKLF 509
EL ER +Q R K G + + G+HPPK+Q++SKY+R++D R++ ++++++
Sbjct: 250 ELNERSRQVARANNAKNGQVSGDDTGGRHPPKVQISSKYDRQIDRRNFKERRQVY 304
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -2
Query: 627 SRRVSTPKRSQASTRPKFK*RPSTRGVSTHDPTTTKRNCSG*PRETEQGLPREGVARESR 448
S + T ST P+ T+ +T DP ++ S P ET + EG E
Sbjct: 119 STSLKTSTSDSTSTEPRISTTTDTKDTTTEDPVSSTDQSSTSPHETTRDTTTEGTTSEDS 178
Query: 447 T 445
T
Sbjct: 179 T 179
>U41010-3|AAF98587.1| 655|Caenorhabditis elegans Hypothetical
protein T05A12.3 protein.
Length = 655
Score = 31.1 bits (67), Expect = 0.74
Identities = 22/87 (25%), Positives = 42/87 (48%)
Frame = -3
Query: 662 RKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKLNK 483
+K K E + + + P+ + P+ +SSS V A +L RQ+ + +KL+
Sbjct: 56 KKRKEREEDERRKNFTIPK--RNEGPSSSSSS-NVNSAAVRAVLERQRAEKEAKEKKLDS 112
Query: 482 DFLEKVWQERAEQFGGRQKARLPKWFG 402
+ +K+ R + GG+ ++ K FG
Sbjct: 113 E-KQKLMMLRMQANGGKATKKMGKQFG 138
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 667 LKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKK 515
+ E++K++L HK L G D E + K K + K E+R + DKKK
Sbjct: 247 MTEKEKKKL-HKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKK 296
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 667 LKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKK 515
+ E++K++L HK L G D E + K K + K E+R + DKKK
Sbjct: 247 MTEKEKKKL-HKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKK 296
>Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical
protein F59B10.2 protein.
Length = 482
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -3
Query: 635 QSSQEGSRPRSAHRQAP-AQNSSSVQVREACRHTILRRQKE 516
+SS++ +PR R+AP + +SSS +R+A R + R++E
Sbjct: 360 KSSEKMEKPRKDIRRAPRSSSSSSSTLRDAEREQDIERRRE 400
>AF016688-7|AAB66080.1| 726|Caenorhabditis elegans Hypothetical
protein F18A12.1 protein.
Length = 726
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 615 STPKRSQASTRPKFK*RPSTRGVSTHDPTTTKRNC 511
STPKR+ A+ + + G+S HD KRNC
Sbjct: 358 STPKRTLANYLIFYYMDHAMNGLSVHDNVIKKRNC 392
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 473 EKVWQERAEQFGGRQKARLPKWFGERP--GKKKGELE 369
E + Q+RA+Q GRQK K G +P GK K ++E
Sbjct: 555 ESLAQQRAKQKDGRQKQYGKKSMGPKPPNGKPKEKIE 591
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,287,171
Number of Sequences: 27780
Number of extensions: 170927
Number of successful extensions: 637
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -