Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0761.Seq
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    28   4.9  
At1g06160.1 68414.m00647 ethylene-responsive factor, putative si...    28   6.5  
At2g37100.1 68415.m04552 protamine P1 family protein contains Pf...    27   8.5  

>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 1192

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = -3

Query: 644 TEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKLNKDFLEKV 465
           ++ + S E S+ RS   +   Q    +Q + + R    R+Q +       + N+D  +++
Sbjct: 606 SKTERSSESSKARSGSHRDFQQEEDVIQDKHSSRPANNRKQYDNNAPHQSRKNQDRGKEM 665

Query: 464 WQERAEQFGGRQKA 423
            + RA   GGR+ +
Sbjct: 666 ERTRAASKGGRENS 679


>At1g06160.1 68414.m00647 ethylene-responsive factor, putative
           similar to ethylene response factor 1 GB:AAD03544
           GI:4128208 from [Arabidopsis thaliana]
          Length = 244

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -3

Query: 638 AQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVQGDLEKLNKDFLEKV 465
           + SS   S P S+   + + +SSS+  R   +  ++ ++  T    LE L  ++LE++
Sbjct: 182 SSSSTLTSSPSSSSSYSSSSSSSSLSSRSRKQSVVMTQESNTTLVVLEDLGAEYLEEL 239


>At2g37100.1 68415.m04552 protamine P1 family protein contains Pfam
           PF00260: Protamine P1
          Length = 297

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -2

Query: 630 LSRRVSTPKRSQASTRPK----FK*RPSTRGVSTHDPTTTKRNCSG*PRETEQGLPREGV 463
           L R + T  RS++ +R +    F+ + ++    T +PT+ K  C G  R      P+   
Sbjct: 21  LMRFLRTKSRSRSRSRSRRPIFFRRKNASAAAETQEPTSPKVTCMGQVRINRSKKPKPET 80

Query: 462 ARES 451
           AR S
Sbjct: 81  ARVS 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,658,172
Number of Sequences: 28952
Number of extensions: 157463
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)