Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0760.Seq
         (732 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   0.004
UniRef50_Q8IFX6 Cluster: Putative uncharacterized protein; n=5; ...    33   5.5  
UniRef50_Q1EV75 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_Q4P3C7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   9.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 26/50 (52%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 579 RVRRVH*PIDNPLSFSPDLLSGSRF-DPMVLCEALLFLGLILAQSLRLSP 433
           RVRR   P   P+ F       SRF      CEALL LGL+LA SLRLSP
Sbjct: 63  RVRRATNPKTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSP 112


>UniRef50_Q8IFX6 Cluster: Putative uncharacterized protein; n=5;
            Caenorhabditis elegans|Rep: Putative uncharacterized
            protein - Caenorhabditis elegans
          Length = 2232

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 464  SPRKS-SASQSTIGSKRDPLRRSGEKLSGLSMG*CTRRTLAPSPGSTSESVAITTGDL 634
            SP  S S S ST G+   P   SG  L+ +S       T+  S GSTS  V+ T+GD+
Sbjct: 1093 SPNPSQSTSPSTSGATSSP-GSSGTTLTSISPSPSQSSTIGSSQGSTSPVVSTTSGDM 1149


>UniRef50_Q1EV75 Cluster: Putative uncharacterized protein; n=1;
           Clostridium oremlandii OhILAs|Rep: Putative
           uncharacterized protein - Clostridium oremlandii OhILAs
          Length = 141

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = -2

Query: 290 VFSDNKTKICDVT*RRP*CTLLNLHVN*LLIGV*CLQRVFLIGITFLFTHYKQANCFNAT 111
           VF    TK  D T +    TL  +HV+  ++GV  L  + L+   F  T+ K+ N F   
Sbjct: 20  VFYREFTKFNDFTGKT---TLAVMHVHLFVLGVVLLLIMLLLEKQFNLTNNKKFNQFYIV 76

Query: 110 YNMGVMQNTVLSYI 69
           YN+G+M    +  I
Sbjct: 77  YNIGLMSTVTMFLI 90


>UniRef50_Q4P3C7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 1243

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +2

Query: 476 SSASQSTIGSKRDPLRRSGEKLSGLSMG*CTRRTLAPSPGSTSESVAITTGDLCYF 643
           SSAS S+  S   P R S    S  S+  C+   L+PSP +TS + AI     CYF
Sbjct: 56  SSASSSS--SLSTPTRHSISSTSRNSLSRCS--ILSPSPSATSPAAAIDNPTQCYF 107


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 546 PLSFSPDLLSGSRF 505
           PLSFSPDLLSGSRF
Sbjct: 396 PLSFSPDLLSGSRF 409


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,671,924
Number of Sequences: 1657284
Number of extensions: 11729265
Number of successful extensions: 22613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22597
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)