Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0760.Seq
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1117 - 34633311-34634030,34634434-34634873,34635320-346353...    28   6.6  
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    28   8.8  
03_02_0667 - 10284554-10284735,10284949-10285141,10285226-102853...    28   8.8  

>01_06_1117 -
           34633311-34634030,34634434-34634873,34635320-34635370,
           34635522-34635642
          Length = 443

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 458 KISPRKSSASQSTIGSKRDPLRRSGEKLSGLSMG*CTRRTLAPSPGSTSESVAI 619
           K  P KSS+S+S+ GSK+D  R+     S  S     +R   PS  +T   V++
Sbjct: 259 KYKPAKSSSSRSSSGSKKD--RKHSRHSSSSSSSSNHKRDRKPSYRNTVGGVSV 310


>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
            20928549-20928788,20928884-20928978,20929087-20929434,
            20929824-20930042,20930422-20930487,20931191-20931362,
            20931456-20931703,20931933-20932073,20932238-20932330,
            20932421-20932471,20933571-20933693,20933793-20934035,
            20934131-20934211,20935245-20935340,20935535-20936320,
            20936443-20937012,20937322-20937427,20938102-20938206,
            20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 565  ALTHRQPTEFLAGSSQWVAFRSDGTLRSTALSRANLSTISQIEPHRLQA 419
            +L   Q    L  S  W+A  S   +R T+LSR   S      PH++QA
Sbjct: 1258 SLVRNQLGSLLLSSEDWMA--SHKAVRVTSLSRGYTSNRGLRSPHQIQA 1304


>03_02_0667 -
           10284554-10284735,10284949-10285141,10285226-10285307,
           10286537-10286751
          Length = 223

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 398 EFFFLPIRL*PMGLNLRDCAKISPRKSSAS 487
           +FFF  ++  P G++   C KI PR   A+
Sbjct: 140 KFFFAEVKRGPDGMSCVSCVKIDPRSPEAT 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,612
Number of Sequences: 37544
Number of extensions: 307224
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)