Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0760.Seq
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    30   1.9  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    30   1.9  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    30   1.9  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    30   1.9  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 464  SPRKS-SASQSTIGSKRDPLRRSGEKLSGLSMG*CTRRTLAPSPGSTSESVAITTGDL 634
            SP  S S S ST G+   P   SG  L+ +S       T+  S GSTS  V+ T+GD+
Sbjct: 1093 SPNPSQSTSPSTSGATSSP-GSSGTTLTSISPSPSQSSTIGSSQGSTSPVVSTTSGDM 1149


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 428 PMGLNLRDCAKISPRKSSASQSTIGSKRDPLRRSGEKLSG 547
           P+G N   CA    R++S + +  G K   + + GEK SG
Sbjct: 207 PIGNNANACAPTRSRRTSTASNKSGGKIGKVAKLGEKSSG 246


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 428 PMGLNLRDCAKISPRKSSASQSTIGSKRDPLRRSGEKLSG 547
           P+G N   CA    R++S + +  G K   + + GEK SG
Sbjct: 224 PIGNNANACAPTRSRRTSTASNKSGGKIGKVAKLGEKSSG 263


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 428 PMGLNLRDCAKISPRKSSASQSTIGSKRDPLRRSGEKLSG 547
           P+G N   CA    R++S + +  G K   + + GEK SG
Sbjct: 224 PIGNNANACAPTRSRRTSTASNKSGGKIGKVAKLGEKSSG 263


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 428 PMGLNLRDCAKISPRKSSASQSTIGSKRDPLRRSGEKLSG 547
           P+G N   CA    R++S + +  G K   + + GEK SG
Sbjct: 207 PIGNNANACAPTRSRRTSTASNKSGGKIGKVAKLGEKSSG 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,162,727
Number of Sequences: 27780
Number of extensions: 288453
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)