Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0760.Seq
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/64 (21%), Positives = 35/64 (54%)
 Frame = -1

Query: 534 SPDLLSGSRFDPMVLCEALLFLGLILAQSLRLSPIGYKRIGRKKNSELHSDKSQTLQPLT 355
           S D+L+   F  +V    +LFLGL+   +  ++ +   ++ ++++ ++ +   +TLQ + 
Sbjct: 301 SQDILNTQSFGKVVSKNGVLFLGLV--GNSGIACVNEHQVLQRESFDVVAQNEETLQMIV 358

Query: 354 RGRI 343
             +I
Sbjct: 359 SMKI 362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 487 RSTALSRANLSTISQIE 437
           RSTA +R  +  +SQ+E
Sbjct: 311 RSTAQARVRMQVVSQLE 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,502
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)