Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0759.Seq
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.66 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.1  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.1  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 FWGRGAVKH*IGTLKGAPDL 395
           +WGR   +H +G L+G P+L
Sbjct: 227 YWGRAIARHFVGQLRGGPNL 246


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +3

Query: 234 NKSPLLKTWTPTSKGEKPSI-----RAMAHYVNHHPNQVFWGRG 350
           NK   +KT  P + GE   +     R  +  VN HP+Q  +G G
Sbjct: 147 NKESFIKTRRPRTNGELSDLSLQPKRIFSEPVNSHPSQSMFGNG 190


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 133 VKSAHFLTNRPKSAKSLINQKNRP 204
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 206 DRVECCSSLEQESTIKDVDSNVKGRKTVYQGDGPLREPSP*SSFLG 343
           ++ E    LE++    DV+ +V    T Y+ +G   + SP SS +G
Sbjct: 415 EQEEVIRKLEKDLADVDVEGSVYLSNTTYRREGTSGQLSPTSSIMG 460


>SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 99

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 9   SPAGVIAKRPAPIALPNSCAACNGEW 86
           S  G + K  A  A+ + C A NGEW
Sbjct: 40  SNVGSVIKLEAGFAVWSRCEAANGEW 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,772
Number of Sequences: 5004
Number of extensions: 54396
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)