Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0759.Seq
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    30   1.4  
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    29   4.3  
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    29   4.3  

>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 162 AEIGKIPYKSKE*TEIGLSVVPVWNKSPLLKTWTPTSKGEK 284
           A++ K+P K+ +  EI  +  P    +P  +T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 162 AEIGKIPYKSKE*TEIGLSVVPVWNKSPLLKTWTPTSKGEK 284
           A++ K+P K+ +  EI  +  P    +P  +T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 162 AEIGKIPYKSKE*TEIGLSVVPVWNKSPLLKTWTPTSKGEK 284
           A++ K+P K+ +  EI  +  P    +P  +T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 162 AEIGKIPYKSKE*TEIGLSVVPVWNKSPLLKTWTPTSKGEK 284
           A++ K+P K+ +  EI  +  P    +P  +T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 162 AEIGKIPYKSKE*TEIGLSVVPVWNKSPLLKTWTPTSKGEK 284
           A++ K+P K+ +  EI  +  P    +P  +T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 162 AEIGKIPYKSKE*TEIGLSVVPVWNKSPLLKTWTPTSKGEK 284
           A++ K+P K+ +  EI  +  P    +P  +T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -3

Query: 253 FNSGLLFQTGTTLNPISVYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTICHSPL 74
           F      Q GT + P S+      G +  SA+W    +I   + AN    LTL    +P+
Sbjct: 644 FTLAAFMQQGTDILPRSIS-----GRIASSAWWFFTMIIVSSYTANLAAFLTLEKMQAPI 698

Query: 73  QAAQLLGR 50
           ++ + L +
Sbjct: 699 ESVEDLAK 706


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -3

Query: 253 FNSGLLFQTGTTLNPISVYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTICHSPL 74
           F      Q GT + P S+      G +  SA+W    +I   + AN    LTL    +P+
Sbjct: 644 FTLAAFMQQGTDILPRSIS-----GRIASSAWWFFTMIIVSSYTANLAAFLTLEKMQAPI 698

Query: 73  QAAQLLGR 50
           ++ + L +
Sbjct: 699 ESVEDLAK 706


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,292
Number of Sequences: 27780
Number of extensions: 308486
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)