Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0759.Seq
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    24   1.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    24   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.7  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   PLSPAGVIAKRPAPIALPNSCAACNGE 83
           P  P G   K  AP+ L  +C  C+ E
Sbjct: 60  PCDPVGRRLKSLAPLVLRGACPQCSPE 86


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   PLSPAGVIAKRPAPIALPNSCAACNGE 83
           P  P G   K  AP+ L  +C  C+ E
Sbjct: 60  PCDPVGRRLKSLAPLVLRGACPQCSPE 86


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 580 LFIFLNTFKYVSAHETITLINASIILKKEEYEYSTF 687
           LF+ L+ F  V   ETI  +N++ +    +  Y ++
Sbjct: 605 LFLLLDMFNCVVVEETIPSLNSTNVTLSTKCPYPSY 640


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 163 AYWLKNELI*QKFNANFNKILTLTICHSPLQAA 65
           ++W+K E    +       +LTL+  H+  QA+
Sbjct: 265 SFWIKPEAAPARVTLGVTSLLTLSTQHAKSQAS 297


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 541 SVALFGKCARNPNLFIF 591
           SVA++ +   NPNLFI+
Sbjct: 111 SVAVYCRDRLNPNLFIY 127


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 669 LFLFQYY*SI-YQGYCLMSGYIFECI 595
           +++FQ   S    G+CL+    FECI
Sbjct: 439 MYVFQLLDSYAVSGFCLLFLMFFECI 464


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 669 LFLFQYY*SI-YQGYCLMSGYIFECI 595
           +++FQ   S    G+CL+    FECI
Sbjct: 492 MYVFQLLDSYAVSGFCLLFLMFFECI 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,876
Number of Sequences: 438
Number of extensions: 4082
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)